Experiment: 2-Furfuraldehyde 0.2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS08055 and AZOBR_RS08060 are separated by 100 nucleotides AZOBR_RS08060 and AZOBR_RS08065 are separated by 11 nucleotides AZOBR_RS08065 and AZOBR_RS08070 are separated by 26 nucleotides
AZOBR_RS08055: AZOBR_RS08055 - urease accessory protein, at 1,700,372 to 1,701,199
_RS08055
AZOBR_RS08060: AZOBR_RS08060 - urease subunit gamma, at 1,701,300 to 1,701,602
_RS08060
AZOBR_RS08065: AZOBR_RS08065 - urease subunit beta, at 1,701,614 to 1,701,919
_RS08065
AZOBR_RS08070: AZOBR_RS08070 - urease subunit alpha, at 1,701,946 to 1,703,655
_RS08070
Position (kb)
1700
1701
1702 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1699.376 kb on - strand at 1699.428 kb on + strand at 1699.760 kb on - strand at 1699.817 kb on - strand at 1699.874 kb on - strand at 1700.041 kb on + strand at 1700.041 kb on + strand at 1700.041 kb on + strand at 1700.042 kb on - strand at 1700.042 kb on - strand at 1700.092 kb on + strand at 1700.092 kb on + strand at 1700.318 kb on + strand at 1700.318 kb on + strand at 1700.318 kb on + strand at 1700.319 kb on - strand at 1700.451 kb on - strand at 1700.975 kb on + strand, within AZOBR_RS08055 at 1700.975 kb on + strand, within AZOBR_RS08055 at 1700.975 kb on + strand, within AZOBR_RS08055 at 1700.975 kb on + strand, within AZOBR_RS08055 at 1701.122 kb on + strand at 1701.260 kb on + strand at 1701.261 kb on - strand at 1701.424 kb on - strand, within AZOBR_RS08060 at 1701.424 kb on - strand, within AZOBR_RS08060 at 1701.732 kb on - strand, within AZOBR_RS08065 at 1701.732 kb on - strand, within AZOBR_RS08065 at 1701.864 kb on - strand, within AZOBR_RS08065 at 1701.864 kb on - strand, within AZOBR_RS08065 at 1701.986 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.2 vol% remove 1,699,376 - +0.0 1,699,428 + +0.3 1,699,760 - -0.8 1,699,817 - +0.8 1,699,874 - -0.2 1,700,041 + +2.1 1,700,041 + +0.8 1,700,041 + -0.8 1,700,042 - +0.3 1,700,042 - +0.4 1,700,092 + -1.7 1,700,092 + -0.7 1,700,318 + -0.3 1,700,318 + +0.0 1,700,318 + -0.3 1,700,319 - +0.7 1,700,451 - +0.0 1,700,975 + AZOBR_RS08055 0.73 -0.2 1,700,975 + AZOBR_RS08055 0.73 -2.7 1,700,975 + AZOBR_RS08055 0.73 +0.0 1,700,975 + AZOBR_RS08055 0.73 -3.7 1,701,122 + -0.1 1,701,260 + +0.9 1,701,261 - -1.2 1,701,424 - AZOBR_RS08060 0.41 +0.5 1,701,424 - AZOBR_RS08060 0.41 -0.7 1,701,732 - AZOBR_RS08065 0.39 +0.3 1,701,732 - AZOBR_RS08065 0.39 -0.0 1,701,864 - AZOBR_RS08065 0.82 +0.1 1,701,864 - AZOBR_RS08065 0.82 -0.1 1,701,986 - -1.0
Or see this region's nucleotide sequence