Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS06280

Experiment: 2-Furfuraldehyde 0.2 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS06270 and AZOBR_RS06275 overlap by 4 nucleotidesAZOBR_RS06275 and AZOBR_RS06280 are separated by 27 nucleotidesAZOBR_RS06280 and AZOBR_RS06285 overlap by 54 nucleotides AZOBR_RS06270: AZOBR_RS06270 - ligase, at 1,328,075 to 1,329,259 _RS06270 AZOBR_RS06275: AZOBR_RS06275 - heptosyltransferase, at 1,329,256 to 1,330,200 _RS06275 AZOBR_RS06280: AZOBR_RS06280 - membrane protein of unknown function, at 1,330,228 to 1,331,316 _RS06280 AZOBR_RS06285: AZOBR_RS06285 - epoxyqueuosine reductase, at 1,331,263 to 1,332,279 _RS06285 Position (kb) 1330 1331 1332Strain fitness (log2 ratio) -1 0 1at 1330.609 kb on + strand, within AZOBR_RS06280at 1331.105 kb on + strand, within AZOBR_RS06280at 1331.559 kb on - strand, within AZOBR_RS06285at 1331.559 kb on - strand, within AZOBR_RS06285at 1331.559 kb on - strand, within AZOBR_RS06285at 1331.624 kb on + strand, within AZOBR_RS06285at 1331.756 kb on + strand, within AZOBR_RS06285at 1331.957 kb on + strand, within AZOBR_RS06285at 1332.038 kb on + strand, within AZOBR_RS06285

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.2 vol%
remove
1,330,609 + AZOBR_RS06280 0.35 -0.9
1,331,105 + AZOBR_RS06280 0.81 -1.0
1,331,559 - AZOBR_RS06285 0.29 -0.9
1,331,559 - AZOBR_RS06285 0.29 -0.5
1,331,559 - AZOBR_RS06285 0.29 -0.4
1,331,624 + AZOBR_RS06285 0.35 -0.0
1,331,756 + AZOBR_RS06285 0.48 -0.8
1,331,957 + AZOBR_RS06285 0.68 +0.8
1,332,038 + AZOBR_RS06285 0.76 +0.6

Or see this region's nucleotide sequence