Experiment: 2-Furfuraldehyde 0.2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS05885 and AZOBR_RS05890 overlap by 4 nucleotides AZOBR_RS05890 and AZOBR_RS05895 are separated by 35 nucleotides AZOBR_RS05895 and AZOBR_RS05900 are separated by 291 nucleotides AZOBR_RS05900 and AZOBR_RS05905 overlap by 7 nucleotides
AZOBR_RS05885: AZOBR_RS05885 - hypothetical protein, at 1,249,640 to 1,250,398
_RS05885
AZOBR_RS05890: AZOBR_RS05890 - 4-carboxymuconolactone decarboxylase, at 1,250,395 to 1,250,802
_RS05890
AZOBR_RS05895: AZOBR_RS05895 - hypothetical protein, at 1,250,838 to 1,251,209
_RS05895
AZOBR_RS05900: AZOBR_RS05900 - hypothetical protein, at 1,251,501 to 1,251,776
_RS05900
AZOBR_RS05905: AZOBR_RS05905 - putative 3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase), at 1,251,770 to 1,252,561
_RS05905
Position (kb)
1250
1251
1252 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1250.413 kb on + strand at 1250.413 kb on + strand at 1250.414 kb on - strand at 1250.414 kb on - strand at 1250.414 kb on - strand at 1250.498 kb on + strand, within AZOBR_RS05890 at 1250.663 kb on + strand, within AZOBR_RS05890 at 1250.663 kb on + strand, within AZOBR_RS05890 at 1250.663 kb on + strand, within AZOBR_RS05890 at 1250.663 kb on + strand, within AZOBR_RS05890 at 1250.663 kb on + strand, within AZOBR_RS05890 at 1250.663 kb on + strand, within AZOBR_RS05890 at 1250.663 kb on + strand, within AZOBR_RS05890 at 1250.664 kb on - strand, within AZOBR_RS05890 at 1250.845 kb on + strand at 1250.846 kb on - strand at 1250.846 kb on - strand at 1250.884 kb on + strand, within AZOBR_RS05895 at 1250.885 kb on - strand, within AZOBR_RS05895 at 1250.944 kb on + strand, within AZOBR_RS05895 at 1251.013 kb on + strand, within AZOBR_RS05895 at 1251.013 kb on + strand, within AZOBR_RS05895 at 1251.014 kb on - strand, within AZOBR_RS05895 at 1251.014 kb on - strand, within AZOBR_RS05895 at 1251.014 kb on - strand, within AZOBR_RS05895 at 1251.014 kb on - strand, within AZOBR_RS05895 at 1251.058 kb on + strand, within AZOBR_RS05895 at 1251.058 kb on + strand, within AZOBR_RS05895 at 1251.059 kb on - strand, within AZOBR_RS05895 at 1251.086 kb on - strand, within AZOBR_RS05895 at 1251.424 kb on + strand at 1251.424 kb on + strand at 1251.424 kb on + strand at 1251.424 kb on + strand at 1251.424 kb on + strand at 1251.425 kb on - strand at 1251.425 kb on - strand at 1251.425 kb on - strand at 1251.535 kb on + strand, within AZOBR_RS05900 at 1251.535 kb on + strand, within AZOBR_RS05900 at 1251.536 kb on - strand, within AZOBR_RS05900 at 1251.536 kb on - strand, within AZOBR_RS05900 at 1251.780 kb on + strand at 1251.780 kb on + strand at 1251.780 kb on + strand at 1251.781 kb on - strand at 1251.781 kb on - strand at 1251.781 kb on - strand at 1251.781 kb on - strand at 1251.781 kb on - strand at 1251.781 kb on - strand at 1251.781 kb on - strand at 1252.050 kb on + strand, within AZOBR_RS05905 at 1252.051 kb on - strand, within AZOBR_RS05905
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.2 vol% remove 1,250,413 + -2.0 1,250,413 + -0.5 1,250,414 - +0.0 1,250,414 - -1.8 1,250,414 - -1.8 1,250,498 + AZOBR_RS05890 0.25 -0.9 1,250,663 + AZOBR_RS05890 0.66 +0.5 1,250,663 + AZOBR_RS05890 0.66 +0.3 1,250,663 + AZOBR_RS05890 0.66 +0.1 1,250,663 + AZOBR_RS05890 0.66 -0.4 1,250,663 + AZOBR_RS05890 0.66 +0.1 1,250,663 + AZOBR_RS05890 0.66 -0.4 1,250,663 + AZOBR_RS05890 0.66 +1.8 1,250,664 - AZOBR_RS05890 0.66 -1.1 1,250,845 + +2.4 1,250,846 - -0.1 1,250,846 - +0.3 1,250,884 + AZOBR_RS05895 0.12 -0.4 1,250,885 - AZOBR_RS05895 0.13 -1.0 1,250,944 + AZOBR_RS05895 0.28 -1.5 1,251,013 + AZOBR_RS05895 0.47 +1.5 1,251,013 + AZOBR_RS05895 0.47 -1.6 1,251,014 - AZOBR_RS05895 0.47 -1.5 1,251,014 - AZOBR_RS05895 0.47 +1.7 1,251,014 - AZOBR_RS05895 0.47 +0.3 1,251,014 - AZOBR_RS05895 0.47 -0.7 1,251,058 + AZOBR_RS05895 0.59 -1.1 1,251,058 + AZOBR_RS05895 0.59 -0.4 1,251,059 - AZOBR_RS05895 0.59 -0.7 1,251,086 - AZOBR_RS05895 0.67 -1.3 1,251,424 + -0.0 1,251,424 + -1.5 1,251,424 + +0.2 1,251,424 + -0.2 1,251,424 + -0.4 1,251,425 - -0.1 1,251,425 - -1.2 1,251,425 - -1.8 1,251,535 + AZOBR_RS05900 0.12 -3.7 1,251,535 + AZOBR_RS05900 0.12 -1.9 1,251,536 - AZOBR_RS05900 0.13 +1.0 1,251,536 - AZOBR_RS05900 0.13 -0.6 1,251,780 + -0.6 1,251,780 + -0.3 1,251,780 + +1.3 1,251,781 - -0.6 1,251,781 - +0.7 1,251,781 - +0.9 1,251,781 - -0.4 1,251,781 - -1.5 1,251,781 - +0.4 1,251,781 - -0.6 1,252,050 + AZOBR_RS05905 0.35 +1.5 1,252,051 - AZOBR_RS05905 0.35 +0.1
Or see this region's nucleotide sequence