Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS05180

Experiment: 2-Furfuraldehyde 0.2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS05175 and AZOBR_RS05180 are separated by 8 nucleotidesAZOBR_RS05180 and AZOBR_RS05185 are separated by 455 nucleotides AZOBR_RS05175: AZOBR_RS05175 - ATP-dependent Clp protease ATP-binding protein, at 1,100,949 to 1,103,264 _RS05175 AZOBR_RS05180: AZOBR_RS05180 - Clp protease ClpS, at 1,103,273 to 1,103,599 _RS05180 AZOBR_RS05185: AZOBR_RS05185 - hypothetical protein, at 1,104,055 to 1,104,540 _RS05185 Position (kb) 1103 1104Strain fitness (log2 ratio) -2 -1 0 1at 1102.283 kb on - strand, within AZOBR_RS05175at 1102.619 kb on - strand, within AZOBR_RS05175at 1102.746 kb on + strand, within AZOBR_RS05175at 1102.858 kb on + strand, within AZOBR_RS05175at 1103.084 kb on - strandat 1103.194 kb on + strandat 1103.563 kb on + strand, within AZOBR_RS05180at 1103.626 kb on + strandat 1103.812 kb on + strandat 1103.812 kb on + strandat 1103.812 kb on + strandat 1103.812 kb on + strandat 1103.813 kb on - strandat 1103.813 kb on - strandat 1103.903 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.2 vol%
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1,102,283 - AZOBR_RS05175 0.58 -2.4
1,102,619 - AZOBR_RS05175 0.72 -1.6
1,102,746 + AZOBR_RS05175 0.78 -2.3
1,102,858 + AZOBR_RS05175 0.82 -1.7
1,103,084 - +1.6
1,103,194 + -0.6
1,103,563 + AZOBR_RS05180 0.89 -0.8
1,103,626 + -1.7
1,103,812 + -0.5
1,103,812 + -0.3
1,103,812 + +0.5
1,103,812 + +0.3
1,103,813 - -0.5
1,103,813 - -1.3
1,103,903 + -0.2

Or see this region's nucleotide sequence