Experiment: 2-Furfuraldehyde 0.2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS04080 and AZOBR_RS04085 are separated by 108 nucleotides AZOBR_RS04085 and AZOBR_RS04090 are separated by 21 nucleotides AZOBR_RS04090 and AZOBR_RS04095 are separated by 11 nucleotides
AZOBR_RS04080: AZOBR_RS04080 - cytochrome C, at 858,892 to 859,758
_RS04080
AZOBR_RS04085: AZOBR_RS04085 - membrane protein, at 859,867 to 860,610
_RS04085
AZOBR_RS04090: AZOBR_RS04090 - haloacid dehalogenase, at 860,632 to 861,300
_RS04090
AZOBR_RS04095: AZOBR_RS04095 - glutamate 5-kinase, at 861,312 to 862,442
_RS04095
Position (kb) 860
861
862 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 859.640 kb on + strand, within AZOBR_RS04080 at 859.640 kb on + strand, within AZOBR_RS04080 at 859.685 kb on - strand at 859.685 kb on - strand at 859.687 kb on + strand at 859.687 kb on + strand at 859.687 kb on + strand at 859.688 kb on - strand at 859.688 kb on - strand at 859.738 kb on - strand at 859.808 kb on + strand at 859.829 kb on - strand at 859.829 kb on - strand at 860.038 kb on + strand, within AZOBR_RS04085 at 860.230 kb on + strand, within AZOBR_RS04085 at 860.230 kb on + strand, within AZOBR_RS04085 at 860.230 kb on + strand, within AZOBR_RS04085 at 860.231 kb on - strand, within AZOBR_RS04085 at 860.297 kb on - strand, within AZOBR_RS04085 at 860.456 kb on - strand, within AZOBR_RS04085 at 860.588 kb on - strand at 861.063 kb on - strand, within AZOBR_RS04090 at 861.134 kb on + strand, within AZOBR_RS04090 at 861.135 kb on - strand, within AZOBR_RS04090 at 861.170 kb on + strand, within AZOBR_RS04090
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.2 vol% remove 859,640 + AZOBR_RS04080 0.86 +0.4 859,640 + AZOBR_RS04080 0.86 +0.6 859,685 - +0.4 859,685 - -1.1 859,687 + -0.9 859,687 + -3.1 859,687 + +0.1 859,688 - -0.3 859,688 - +0.7 859,738 - +1.5 859,808 + -0.7 859,829 - +0.0 859,829 - +0.2 860,038 + AZOBR_RS04085 0.23 -3.0 860,230 + AZOBR_RS04085 0.49 -2.7 860,230 + AZOBR_RS04085 0.49 -2.4 860,230 + AZOBR_RS04085 0.49 +0.7 860,231 - AZOBR_RS04085 0.49 +1.0 860,297 - AZOBR_RS04085 0.58 -0.8 860,456 - AZOBR_RS04085 0.79 +0.0 860,588 - +0.3 861,063 - AZOBR_RS04090 0.64 +0.5 861,134 + AZOBR_RS04090 0.75 +0.6 861,135 - AZOBR_RS04090 0.75 +0.9 861,170 + AZOBR_RS04090 0.80 +0.6
Or see this region's nucleotide sequence