Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS03235

Experiment: 2-Furfuraldehyde 0.2 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS03230 and AZOBR_RS03235 are separated by 27 nucleotidesAZOBR_RS03235 and AZOBR_RS03240 are separated by 134 nucleotides AZOBR_RS03230: AZOBR_RS03230 - hypothetical protein, at 686,468 to 687,238 _RS03230 AZOBR_RS03235: AZOBR_RS03235 - hypothetical protein, at 687,266 to 687,667 _RS03235 AZOBR_RS03240: AZOBR_RS03240 - recombinase XerD, at 687,802 to 688,683 _RS03240 Position (kb) 687 688Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 686.469 kb on + strandat 687.175 kb on - strandat 687.821 kb on - strandat 687.907 kb on + strand, within AZOBR_RS03240

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.2 vol%
remove
686,469 + -0.6
687,175 - -1.3
687,821 - -1.8
687,907 + AZOBR_RS03240 0.12 -4.2

Or see this region's nucleotide sequence