Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21995

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21985 and ABZR87_RS21990 overlap by 118 nucleotidesABZR87_RS21990 and ABZR87_RS21995 are separated by 6 nucleotidesABZR87_RS21995 and ABZR87_RS22000 are separated by 34 nucleotidesABZR87_RS22000 and ABZR87_RS22005 overlap by 4 nucleotidesABZR87_RS22005 and ABZR87_RS22010 are separated by 32 nucleotidesABZR87_RS22010 and ABZR87_RS22015 overlap by 1 nucleotides ABZR87_RS21985: ABZR87_RS21985 - contractile injection system protein, VgrG/Pvc8 family, at 1,304,312 to 1,305,571 _RS21985 ABZR87_RS21990: ABZR87_RS21990 - hypothetical protein, at 1,305,454 to 1,306,416 _RS21990 ABZR87_RS21995: ABZR87_RS21995 - phage tail tape measure protein, at 1,306,423 to 1,308,375 _RS21995 ABZR87_RS22000: ABZR87_RS22000 - hypothetical protein, at 1,308,410 to 1,308,814 _RS22000 ABZR87_RS22005: ABZR87_RS22005 - hypothetical protein, at 1,308,811 to 1,308,945 _RS22005 ABZR87_RS22010: ABZR87_RS22010 - hypothetical protein, at 1,308,978 to 1,309,337 _RS22010 ABZR87_RS22015: ABZR87_RS22015 - hypothetical protein, at 1,309,337 to 1,309,768 _RS22015 Position (kb) 1306 1307 1308 1309Strain fitness (log2 ratio) -2 -1 0 1at 1305.587 kb on + strand, within ABZR87_RS21990at 1305.651 kb on - strand, within ABZR87_RS21990at 1305.651 kb on - strand, within ABZR87_RS21990at 1305.772 kb on - strand, within ABZR87_RS21990at 1305.816 kb on + strand, within ABZR87_RS21990at 1306.151 kb on + strand, within ABZR87_RS21990at 1306.152 kb on - strand, within ABZR87_RS21990at 1306.398 kb on + strandat 1306.562 kb on + strandat 1306.562 kb on + strandat 1306.669 kb on + strand, within ABZR87_RS21995at 1306.669 kb on + strand, within ABZR87_RS21995at 1306.677 kb on - strand, within ABZR87_RS21995at 1306.734 kb on + strand, within ABZR87_RS21995at 1306.734 kb on + strand, within ABZR87_RS21995at 1306.734 kb on + strand, within ABZR87_RS21995at 1306.755 kb on - strand, within ABZR87_RS21995at 1306.770 kb on - strand, within ABZR87_RS21995at 1306.779 kb on - strand, within ABZR87_RS21995at 1306.791 kb on + strand, within ABZR87_RS21995at 1306.791 kb on + strand, within ABZR87_RS21995at 1306.791 kb on + strand, within ABZR87_RS21995at 1306.971 kb on + strand, within ABZR87_RS21995at 1307.203 kb on - strand, within ABZR87_RS21995at 1307.228 kb on + strand, within ABZR87_RS21995at 1307.229 kb on - strand, within ABZR87_RS21995at 1307.459 kb on + strand, within ABZR87_RS21995at 1307.459 kb on + strand, within ABZR87_RS21995at 1307.604 kb on + strand, within ABZR87_RS21995at 1307.604 kb on + strand, within ABZR87_RS21995at 1308.136 kb on + strand, within ABZR87_RS21995at 1308.137 kb on - strand, within ABZR87_RS21995at 1308.359 kb on + strandat 1308.360 kb on - strandat 1308.375 kb on + strandat 1308.375 kb on + strandat 1308.700 kb on + strand, within ABZR87_RS22000at 1308.700 kb on + strand, within ABZR87_RS22000at 1308.701 kb on - strand, within ABZR87_RS22000at 1309.078 kb on + strand, within ABZR87_RS22010at 1309.079 kb on - strand, within ABZR87_RS22010at 1309.171 kb on + strand, within ABZR87_RS22010at 1309.172 kb on - strand, within ABZR87_RS22010at 1309.172 kb on - strand, within ABZR87_RS22010at 1309.172 kb on - strand, within ABZR87_RS22010

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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1,305,587 + ABZR87_RS21990 0.14 +0.4
1,305,651 - ABZR87_RS21990 0.20 -0.3
1,305,651 - ABZR87_RS21990 0.20 -0.3
1,305,772 - ABZR87_RS21990 0.33 -0.4
1,305,816 + ABZR87_RS21990 0.38 -1.1
1,306,151 + ABZR87_RS21990 0.72 -0.7
1,306,152 - ABZR87_RS21990 0.72 -1.0
1,306,398 + +0.3
1,306,562 + +1.5
1,306,562 + -0.4
1,306,669 + ABZR87_RS21995 0.13 -0.4
1,306,669 + ABZR87_RS21995 0.13 -1.5
1,306,677 - ABZR87_RS21995 0.13 -0.4
1,306,734 + ABZR87_RS21995 0.16 -2.7
1,306,734 + ABZR87_RS21995 0.16 -1.2
1,306,734 + ABZR87_RS21995 0.16 +0.1
1,306,755 - ABZR87_RS21995 0.17 -0.4
1,306,770 - ABZR87_RS21995 0.18 -0.1
1,306,779 - ABZR87_RS21995 0.18 +0.5
1,306,791 + ABZR87_RS21995 0.19 +0.2
1,306,791 + ABZR87_RS21995 0.19 -0.2
1,306,791 + ABZR87_RS21995 0.19 -0.1
1,306,971 + ABZR87_RS21995 0.28 +0.1
1,307,203 - ABZR87_RS21995 0.40 -1.6
1,307,228 + ABZR87_RS21995 0.41 -1.3
1,307,229 - ABZR87_RS21995 0.41 +0.3
1,307,459 + ABZR87_RS21995 0.53 -2.0
1,307,459 + ABZR87_RS21995 0.53 -0.3
1,307,604 + ABZR87_RS21995 0.60 -0.5
1,307,604 + ABZR87_RS21995 0.60 -0.6
1,308,136 + ABZR87_RS21995 0.88 -0.1
1,308,137 - ABZR87_RS21995 0.88 +0.2
1,308,359 + -0.2
1,308,360 - -0.2
1,308,375 + -0.3
1,308,375 + -0.5
1,308,700 + ABZR87_RS22000 0.72 +1.2
1,308,700 + ABZR87_RS22000 0.72 +0.5
1,308,701 - ABZR87_RS22000 0.72 +1.3
1,309,078 + ABZR87_RS22010 0.28 -0.3
1,309,079 - ABZR87_RS22010 0.28 -0.7
1,309,171 + ABZR87_RS22010 0.54 +0.1
1,309,172 - ABZR87_RS22010 0.54 +0.2
1,309,172 - ABZR87_RS22010 0.54 +0.6
1,309,172 - ABZR87_RS22010 0.54 +0.5

Or see this region's nucleotide sequence