Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18920

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18915 and ABZR87_RS18920 are separated by 13 nucleotidesABZR87_RS18920 and ABZR87_RS18925 are separated by 14 nucleotidesABZR87_RS18925 and ABZR87_RS18930 are separated by 102 nucleotides ABZR87_RS18915: ABZR87_RS18915 - MATE family efflux transporter, at 600,864 to 602,231 _RS18915 ABZR87_RS18920: ABZR87_RS18920 - Rieske (2Fe-2S) protein, at 602,245 to 602,556 _RS18920 ABZR87_RS18925: ABZR87_RS18925 - alpha/beta hydrolase, at 602,571 to 603,146 _RS18925 ABZR87_RS18930: ABZR87_RS18930 - porin, at 603,249 to 604,382 _RS18930 Position (kb) 602 603Strain fitness (log2 ratio) -1 0 1at 601.260 kb on + strand, within ABZR87_RS18915at 601.261 kb on - strand, within ABZR87_RS18915at 601.261 kb on - strand, within ABZR87_RS18915at 601.265 kb on + strand, within ABZR87_RS18915at 601.266 kb on - strand, within ABZR87_RS18915at 601.278 kb on + strand, within ABZR87_RS18915at 601.278 kb on + strand, within ABZR87_RS18915at 601.278 kb on + strand, within ABZR87_RS18915at 601.278 kb on + strand, within ABZR87_RS18915at 601.278 kb on + strand, within ABZR87_RS18915at 601.278 kb on + strand, within ABZR87_RS18915at 601.278 kb on + strand, within ABZR87_RS18915at 601.278 kb on + strand, within ABZR87_RS18915at 601.278 kb on + strand, within ABZR87_RS18915at 601.279 kb on - strand, within ABZR87_RS18915at 601.279 kb on - strand, within ABZR87_RS18915at 601.279 kb on - strand, within ABZR87_RS18915at 601.279 kb on - strand, within ABZR87_RS18915at 601.279 kb on - strand, within ABZR87_RS18915at 601.302 kb on + strand, within ABZR87_RS18915at 601.303 kb on - strand, within ABZR87_RS18915at 601.695 kb on + strand, within ABZR87_RS18915at 601.722 kb on + strand, within ABZR87_RS18915at 601.722 kb on + strand, within ABZR87_RS18915at 601.723 kb on - strand, within ABZR87_RS18915at 601.723 kb on - strand, within ABZR87_RS18915at 601.723 kb on - strand, within ABZR87_RS18915at 601.796 kb on + strand, within ABZR87_RS18915at 602.172 kb on + strandat 602.172 kb on + strandat 602.173 kb on - strandat 602.176 kb on - strandat 602.246 kb on + strandat 602.247 kb on - strandat 602.448 kb on - strand, within ABZR87_RS18920at 602.497 kb on + strand, within ABZR87_RS18920at 602.497 kb on + strand, within ABZR87_RS18920at 602.498 kb on - strand, within ABZR87_RS18920at 602.498 kb on - strand, within ABZR87_RS18920at 602.498 kb on - strand, within ABZR87_RS18920at 602.812 kb on + strand, within ABZR87_RS18925at 603.313 kb on + strandat 603.373 kb on + strand, within ABZR87_RS18930at 603.373 kb on + strand, within ABZR87_RS18930at 603.373 kb on + strand, within ABZR87_RS18930at 603.374 kb on - strand, within ABZR87_RS18930at 603.388 kb on + strand, within ABZR87_RS18930at 603.415 kb on + strand, within ABZR87_RS18930at 603.416 kb on - strand, within ABZR87_RS18930at 603.496 kb on + strand, within ABZR87_RS18930at 603.496 kb on + strand, within ABZR87_RS18930at 603.532 kb on + strand, within ABZR87_RS18930at 603.533 kb on - strand, within ABZR87_RS18930at 603.553 kb on + strand, within ABZR87_RS18930at 603.553 kb on + strand, within ABZR87_RS18930

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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601,260 + ABZR87_RS18915 0.29 +0.2
601,261 - ABZR87_RS18915 0.29 +0.5
601,261 - ABZR87_RS18915 0.29 +0.5
601,265 + ABZR87_RS18915 0.29 +0.4
601,266 - ABZR87_RS18915 0.29 +0.1
601,278 + ABZR87_RS18915 0.30 -1.2
601,278 + ABZR87_RS18915 0.30 -0.6
601,278 + ABZR87_RS18915 0.30 +0.3
601,278 + ABZR87_RS18915 0.30 -1.4
601,278 + ABZR87_RS18915 0.30 -0.1
601,278 + ABZR87_RS18915 0.30 +0.2
601,278 + ABZR87_RS18915 0.30 +0.3
601,278 + ABZR87_RS18915 0.30 +0.3
601,278 + ABZR87_RS18915 0.30 +0.9
601,279 - ABZR87_RS18915 0.30 +0.2
601,279 - ABZR87_RS18915 0.30 -0.9
601,279 - ABZR87_RS18915 0.30 -0.0
601,279 - ABZR87_RS18915 0.30 -0.1
601,279 - ABZR87_RS18915 0.30 +0.2
601,302 + ABZR87_RS18915 0.32 -0.7
601,303 - ABZR87_RS18915 0.32 -0.5
601,695 + ABZR87_RS18915 0.61 -0.7
601,722 + ABZR87_RS18915 0.63 +0.9
601,722 + ABZR87_RS18915 0.63 +0.4
601,723 - ABZR87_RS18915 0.63 -0.2
601,723 - ABZR87_RS18915 0.63 +0.8
601,723 - ABZR87_RS18915 0.63 -0.1
601,796 + ABZR87_RS18915 0.68 +0.1
602,172 + +0.3
602,172 + -0.1
602,173 - +0.2
602,176 - -1.0
602,246 + -0.5
602,247 - +0.3
602,448 - ABZR87_RS18920 0.65 +0.7
602,497 + ABZR87_RS18920 0.81 -0.6
602,497 + ABZR87_RS18920 0.81 -1.2
602,498 - ABZR87_RS18920 0.81 -0.0
602,498 - ABZR87_RS18920 0.81 -0.8
602,498 - ABZR87_RS18920 0.81 -0.3
602,812 + ABZR87_RS18925 0.42 +0.5
603,313 + -0.3
603,373 + ABZR87_RS18930 0.11 -0.5
603,373 + ABZR87_RS18930 0.11 +0.2
603,373 + ABZR87_RS18930 0.11 -1.1
603,374 - ABZR87_RS18930 0.11 +0.3
603,388 + ABZR87_RS18930 0.12 +0.5
603,415 + ABZR87_RS18930 0.15 +1.0
603,416 - ABZR87_RS18930 0.15 -1.2
603,496 + ABZR87_RS18930 0.22 -0.3
603,496 + ABZR87_RS18930 0.22 +1.7
603,532 + ABZR87_RS18930 0.25 +0.9
603,533 - ABZR87_RS18930 0.25 -0.5
603,553 + ABZR87_RS18930 0.27 +0.4
603,553 + ABZR87_RS18930 0.27 -0.9

Or see this region's nucleotide sequence