Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01575 and ABZR87_RS01580 are separated by 32 nucleotides ABZR87_RS01580 and ABZR87_RS01585 are separated by 1 nucleotides ABZR87_RS01585 and ABZR87_RS01590 are separated by 39 nucleotides ABZR87_RS01590 and ABZR87_RS01595 are separated by 209 nucleotides
ABZR87_RS01575: ABZR87_RS01575 - phosphatidylglycerophosphatase A, at 332,875 to 333,453
_RS01575
ABZR87_RS01580: ABZR87_RS01580 - CinA family protein, at 333,486 to 333,986
_RS01580
ABZR87_RS01585: ABZR87_RS01585 - hypothetical protein, at 333,988 to 334,206
_RS01585
ABZR87_RS01590: ABZR87_RS01590 - orotidine-5'-phosphate decarboxylase, at 334,246 to 335,061
_RS01590
ABZR87_RS01595: ABZR87_RS01595 - magnesium/cobalt transporter CorA, at 335,271 to 336,233
_RS01595
Position (kb) 334
335
336 Strain fitness (log2 ratio) -2
-1
0
1 at 333.480 kb on - strand at 333.480 kb on - strand at 333.613 kb on + strand, within ABZR87_RS01580 at 333.614 kb on - strand, within ABZR87_RS01580 at 333.614 kb on - strand, within ABZR87_RS01580 at 333.794 kb on + strand, within ABZR87_RS01580 at 333.989 kb on + strand at 333.989 kb on + strand at 333.990 kb on - strand at 333.990 kb on - strand at 334.534 kb on + strand, within ABZR87_RS01590 at 334.534 kb on + strand, within ABZR87_RS01590 at 334.535 kb on - strand, within ABZR87_RS01590 at 335.114 kb on - strand at 335.211 kb on + strand at 335.211 kb on + strand at 335.212 kb on - strand at 335.216 kb on + strand at 335.217 kb on - strand at 335.412 kb on + strand, within ABZR87_RS01595 at 335.412 kb on + strand, within ABZR87_RS01595 at 335.412 kb on + strand, within ABZR87_RS01595 at 335.413 kb on - strand, within ABZR87_RS01595 at 335.413 kb on - strand, within ABZR87_RS01595 at 335.413 kb on - strand, within ABZR87_RS01595 at 335.469 kb on + strand, within ABZR87_RS01595 at 335.470 kb on - strand, within ABZR87_RS01595 at 335.470 kb on - strand, within ABZR87_RS01595 at 335.685 kb on + strand, within ABZR87_RS01595 at 335.685 kb on + strand, within ABZR87_RS01595 at 335.686 kb on - strand, within ABZR87_RS01595 at 335.686 kb on - strand, within ABZR87_RS01595 at 335.686 kb on - strand, within ABZR87_RS01595 at 335.703 kb on + strand, within ABZR87_RS01595 at 335.704 kb on - strand, within ABZR87_RS01595 at 335.861 kb on + strand, within ABZR87_RS01595
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 333,480 - -0.5 333,480 - -0.8 333,613 + ABZR87_RS01580 0.25 +0.1 333,614 - ABZR87_RS01580 0.26 -0.0 333,614 - ABZR87_RS01580 0.26 +0.6 333,794 + ABZR87_RS01580 0.61 -0.6 333,989 + +0.1 333,989 + +0.3 333,990 - +0.5 333,990 - +0.2 334,534 + ABZR87_RS01590 0.35 -0.6 334,534 + ABZR87_RS01590 0.35 -2.7 334,535 - ABZR87_RS01590 0.35 -1.1 335,114 - -0.2 335,211 + +0.4 335,211 + -0.2 335,212 - -1.4 335,216 + -0.1 335,217 - +1.1 335,412 + ABZR87_RS01595 0.15 +0.4 335,412 + ABZR87_RS01595 0.15 +0.3 335,412 + ABZR87_RS01595 0.15 +1.1 335,413 - ABZR87_RS01595 0.15 -0.3 335,413 - ABZR87_RS01595 0.15 -0.5 335,413 - ABZR87_RS01595 0.15 +0.0 335,469 + ABZR87_RS01595 0.21 -0.4 335,470 - ABZR87_RS01595 0.21 -0.1 335,470 - ABZR87_RS01595 0.21 +0.9 335,685 + ABZR87_RS01595 0.43 -0.3 335,685 + ABZR87_RS01595 0.43 +0.5 335,686 - ABZR87_RS01595 0.43 +0.1 335,686 - ABZR87_RS01595 0.43 +0.1 335,686 - ABZR87_RS01595 0.43 +0.2 335,703 + ABZR87_RS01595 0.45 -0.1 335,704 - ABZR87_RS01595 0.45 -0.3 335,861 + ABZR87_RS01595 0.61 +0.8
Or see this region's nucleotide sequence