Experiment: nitrite 7.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3512 and Shewana3_3513 are separated by 64 nucleotides Shewana3_3513 and Shewana3_3514 are separated by 206 nucleotides
Shewana3_3512: Shewana3_3512 - transcriptional regulator (RefSeq), at 4,212,053 to 4,212,955
_3512
Shewana3_3513: Shewana3_3513 - Dyp-type peroxidase family protein (RefSeq), at 4,213,020 to 4,213,961
_3513
Shewana3_3514: Shewana3_3514 - gamma-glutamyltransferase 2 (RefSeq), at 4,214,168 to 4,215,880
_3514
Position (kb) 4213
4214 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 4212.168 kb on + strand, within Shewana3_3512 at 4212.224 kb on - strand, within Shewana3_3512 at 4212.235 kb on + strand, within Shewana3_3512 at 4212.245 kb on + strand, within Shewana3_3512 at 4212.313 kb on + strand, within Shewana3_3512 at 4212.362 kb on - strand, within Shewana3_3512 at 4212.379 kb on - strand, within Shewana3_3512 at 4212.420 kb on - strand, within Shewana3_3512 at 4212.441 kb on + strand, within Shewana3_3512 at 4212.471 kb on + strand, within Shewana3_3512 at 4212.481 kb on + strand, within Shewana3_3512 at 4212.481 kb on + strand, within Shewana3_3512 at 4212.481 kb on + strand, within Shewana3_3512 at 4212.484 kb on - strand, within Shewana3_3512 at 4212.486 kb on + strand, within Shewana3_3512 at 4212.489 kb on - strand, within Shewana3_3512 at 4212.489 kb on - strand, within Shewana3_3512 at 4212.489 kb on - strand, within Shewana3_3512 at 4212.494 kb on - strand, within Shewana3_3512 at 4212.494 kb on - strand, within Shewana3_3512 at 4212.526 kb on + strand, within Shewana3_3512 at 4212.552 kb on - strand, within Shewana3_3512 at 4212.667 kb on + strand, within Shewana3_3512 at 4212.676 kb on + strand, within Shewana3_3512 at 4212.676 kb on + strand, within Shewana3_3512 at 4212.676 kb on + strand, within Shewana3_3512 at 4212.684 kb on - strand, within Shewana3_3512 at 4212.747 kb on + strand, within Shewana3_3512 at 4212.841 kb on + strand, within Shewana3_3512 at 4212.849 kb on - strand, within Shewana3_3512 at 4213.008 kb on - strand at 4213.024 kb on + strand at 4213.074 kb on + strand at 4213.084 kb on + strand at 4213.158 kb on + strand, within Shewana3_3513 at 4213.219 kb on + strand, within Shewana3_3513 at 4213.221 kb on - strand, within Shewana3_3513 at 4213.262 kb on - strand, within Shewana3_3513 at 4213.275 kb on - strand, within Shewana3_3513 at 4213.900 kb on - strand at 4213.942 kb on - strand at 4214.151 kb on - strand at 4214.151 kb on - strand at 4214.295 kb on + strand at 4214.586 kb on - strand, within Shewana3_3514 at 4214.658 kb on + strand, within Shewana3_3514 at 4214.700 kb on - strand, within Shewana3_3514 at 4214.742 kb on - strand, within Shewana3_3514 at 4214.957 kb on + strand, within Shewana3_3514
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 7.5 mM remove 4,212,168 + Shewana3_3512 0.13 +0.1 4,212,224 - Shewana3_3512 0.19 +0.0 4,212,235 + Shewana3_3512 0.20 -0.1 4,212,245 + Shewana3_3512 0.21 +0.3 4,212,313 + Shewana3_3512 0.29 +0.2 4,212,362 - Shewana3_3512 0.34 +0.4 4,212,379 - Shewana3_3512 0.36 +0.1 4,212,420 - Shewana3_3512 0.41 +0.3 4,212,441 + Shewana3_3512 0.43 +0.2 4,212,471 + Shewana3_3512 0.46 +0.2 4,212,481 + Shewana3_3512 0.47 -0.5 4,212,481 + Shewana3_3512 0.47 +0.1 4,212,481 + Shewana3_3512 0.47 +0.2 4,212,484 - Shewana3_3512 0.48 -0.3 4,212,486 + Shewana3_3512 0.48 -0.7 4,212,489 - Shewana3_3512 0.48 -0.0 4,212,489 - Shewana3_3512 0.48 -0.4 4,212,489 - Shewana3_3512 0.48 +1.1 4,212,494 - Shewana3_3512 0.49 -0.1 4,212,494 - Shewana3_3512 0.49 -0.7 4,212,526 + Shewana3_3512 0.52 +0.3 4,212,552 - Shewana3_3512 0.55 +0.4 4,212,667 + Shewana3_3512 0.68 +0.3 4,212,676 + Shewana3_3512 0.69 +0.4 4,212,676 + Shewana3_3512 0.69 +0.3 4,212,676 + Shewana3_3512 0.69 -0.3 4,212,684 - Shewana3_3512 0.70 -0.1 4,212,747 + Shewana3_3512 0.77 -1.2 4,212,841 + Shewana3_3512 0.87 +0.2 4,212,849 - Shewana3_3512 0.88 +0.6 4,213,008 - -4.1 4,213,024 + -3.9 4,213,074 + -1.5 4,213,084 + -2.6 4,213,158 + Shewana3_3513 0.15 -4.1 4,213,219 + Shewana3_3513 0.21 -5.1 4,213,221 - Shewana3_3513 0.21 -4.0 4,213,262 - Shewana3_3513 0.26 -4.8 4,213,275 - Shewana3_3513 0.27 -2.5 4,213,900 - -5.5 4,213,942 - -3.4 4,214,151 - +0.1 4,214,151 - +0.5 4,214,295 + -0.0 4,214,586 - Shewana3_3514 0.24 -0.1 4,214,658 + Shewana3_3514 0.29 -1.4 4,214,700 - Shewana3_3514 0.31 +0.4 4,214,742 - Shewana3_3514 0.34 +1.0 4,214,957 + Shewana3_3514 0.46 -0.3
Or see this region's nucleotide sequence