Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2567

Experiment: nitrite 7.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2566 and Shewana3_2567 are separated by 565 nucleotidesShewana3_2567 and Shewana3_2568 are separated by 145 nucleotides Shewana3_2566: Shewana3_2566 - ribosomal large subunit pseudouridine synthase C (RefSeq), at 3,066,717 to 3,067,706 _2566 Shewana3_2567: Shewana3_2567 - RNAse E (RefSeq), at 3,068,272 to 3,071,568 _2567 Shewana3_2568: Shewana3_2568 - sulphate transporter (RefSeq), at 3,071,714 to 3,073,273 _2568 Position (kb) 3068 3069 3070 3071 3072Strain fitness (log2 ratio) -3 -2 -1 0 1at 3067.389 kb on + strand, within Shewana3_2566at 3067.534 kb on - strand, within Shewana3_2566at 3067.584 kb on - strand, within Shewana3_2566at 3067.649 kb on - strandat 3067.697 kb on - strandat 3067.697 kb on - strandat 3067.708 kb on + strandat 3070.156 kb on + strand, within Shewana3_2567at 3070.399 kb on + strand, within Shewana3_2567at 3070.419 kb on + strand, within Shewana3_2567at 3070.827 kb on + strand, within Shewana3_2567at 3070.837 kb on + strand, within Shewana3_2567at 3071.082 kb on + strand, within Shewana3_2567at 3071.241 kb on + strandat 3071.435 kb on + strandat 3072.479 kb on + strand, within Shewana3_2568

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 7.5 mM
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3,067,389 + Shewana3_2566 0.68 +1.7
3,067,534 - Shewana3_2566 0.83 +0.3
3,067,584 - Shewana3_2566 0.88 +0.3
3,067,649 - +0.7
3,067,697 - -0.0
3,067,697 - -0.7
3,067,708 + +1.3
3,070,156 + Shewana3_2567 0.57 -2.9
3,070,399 + Shewana3_2567 0.65 -1.8
3,070,419 + Shewana3_2567 0.65 -1.1
3,070,827 + Shewana3_2567 0.77 -1.1
3,070,837 + Shewana3_2567 0.78 -2.1
3,071,082 + Shewana3_2567 0.85 -0.1
3,071,241 + +0.2
3,071,435 + +0.2
3,072,479 + Shewana3_2568 0.49 -0.3

Or see this region's nucleotide sequence