Experiment: nitrite 7.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2419 and Shewana3_2420 are separated by 112 nucleotides Shewana3_2420 and Shewana3_2421 are separated by 81 nucleotides Shewana3_2421 and Shewana3_2422 are separated by 235 nucleotides Shewana3_2422 and Shewana3_2423 are separated by 81 nucleotides
Shewana3_2419: Shewana3_2419 - Ion transport protein (RefSeq), at 2,902,599 to 2,903,468
_2419
Shewana3_2420: Shewana3_2420 - hypothetical protein (RefSeq), at 2,903,581 to 2,904,141
_2420
Shewana3_2421: Shewana3_2421 - hypothetical protein (RefSeq), at 2,904,223 to 2,904,831
_2421
Shewana3_2422: Shewana3_2422 - hypothetical protein (RefSeq), at 2,905,067 to 2,905,327
_2422
Shewana3_2423: Shewana3_2423 - peptidase M23B (RefSeq), at 2,905,409 to 2,906,329
_2423
Position (kb)
2904
2905 Strain fitness (log2 ratio)
-1
0
1 at 2903.227 kb on - strand, within Shewana3_2419 at 2903.347 kb on - strand, within Shewana3_2419 at 2903.347 kb on - strand, within Shewana3_2419 at 2903.347 kb on - strand, within Shewana3_2419 at 2903.638 kb on - strand, within Shewana3_2420 at 2903.661 kb on + strand, within Shewana3_2420 at 2904.018 kb on + strand, within Shewana3_2420 at 2904.023 kb on + strand, within Shewana3_2420 at 2904.468 kb on - strand, within Shewana3_2421 at 2904.542 kb on + strand, within Shewana3_2421 at 2904.608 kb on - strand, within Shewana3_2421 at 2904.722 kb on - strand, within Shewana3_2421 at 2904.797 kb on + strand at 2904.868 kb on - strand at 2904.876 kb on - strand at 2904.968 kb on + strand at 2905.036 kb on + strand at 2905.152 kb on + strand, within Shewana3_2422 at 2905.185 kb on - strand, within Shewana3_2422 at 2905.272 kb on + strand, within Shewana3_2422 at 2905.641 kb on + strand, within Shewana3_2423 at 2905.660 kb on + strand, within Shewana3_2423
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 7.5 mM remove 2,903,227 - Shewana3_2419 0.72 -0.3 2,903,347 - Shewana3_2419 0.86 +0.2 2,903,347 - Shewana3_2419 0.86 +0.5 2,903,347 - Shewana3_2419 0.86 -0.9 2,903,638 - Shewana3_2420 0.10 -0.9 2,903,661 + Shewana3_2420 0.14 -0.4 2,904,018 + Shewana3_2420 0.78 +0.1 2,904,023 + Shewana3_2420 0.79 +0.6 2,904,468 - Shewana3_2421 0.40 -0.4 2,904,542 + Shewana3_2421 0.52 -1.2 2,904,608 - Shewana3_2421 0.63 +0.4 2,904,722 - Shewana3_2421 0.82 -1.6 2,904,797 + +0.6 2,904,868 - -0.0 2,904,876 - +0.6 2,904,968 + -0.4 2,905,036 + +0.5 2,905,152 + Shewana3_2422 0.33 +0.2 2,905,185 - Shewana3_2422 0.45 +0.2 2,905,272 + Shewana3_2422 0.79 +0.4 2,905,641 + Shewana3_2423 0.25 -0.2 2,905,660 + Shewana3_2423 0.27 +0.2
Or see this region's nucleotide sequence