Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2421

Experiment: nitrite 7.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2419 and Shewana3_2420 are separated by 112 nucleotidesShewana3_2420 and Shewana3_2421 are separated by 81 nucleotidesShewana3_2421 and Shewana3_2422 are separated by 235 nucleotidesShewana3_2422 and Shewana3_2423 are separated by 81 nucleotides Shewana3_2419: Shewana3_2419 - Ion transport protein (RefSeq), at 2,902,599 to 2,903,468 _2419 Shewana3_2420: Shewana3_2420 - hypothetical protein (RefSeq), at 2,903,581 to 2,904,141 _2420 Shewana3_2421: Shewana3_2421 - hypothetical protein (RefSeq), at 2,904,223 to 2,904,831 _2421 Shewana3_2422: Shewana3_2422 - hypothetical protein (RefSeq), at 2,905,067 to 2,905,327 _2422 Shewana3_2423: Shewana3_2423 - peptidase M23B (RefSeq), at 2,905,409 to 2,906,329 _2423 Position (kb) 2904 2905Strain fitness (log2 ratio) -1 0 1at 2903.227 kb on - strand, within Shewana3_2419at 2903.347 kb on - strand, within Shewana3_2419at 2903.347 kb on - strand, within Shewana3_2419at 2903.347 kb on - strand, within Shewana3_2419at 2903.638 kb on - strand, within Shewana3_2420at 2903.661 kb on + strand, within Shewana3_2420at 2904.018 kb on + strand, within Shewana3_2420at 2904.023 kb on + strand, within Shewana3_2420at 2904.468 kb on - strand, within Shewana3_2421at 2904.542 kb on + strand, within Shewana3_2421at 2904.608 kb on - strand, within Shewana3_2421at 2904.722 kb on - strand, within Shewana3_2421at 2904.797 kb on + strandat 2904.868 kb on - strandat 2904.876 kb on - strandat 2904.968 kb on + strandat 2905.036 kb on + strandat 2905.152 kb on + strand, within Shewana3_2422at 2905.185 kb on - strand, within Shewana3_2422at 2905.272 kb on + strand, within Shewana3_2422at 2905.641 kb on + strand, within Shewana3_2423at 2905.660 kb on + strand, within Shewana3_2423

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 7.5 mM
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2,903,227 - Shewana3_2419 0.72 -0.3
2,903,347 - Shewana3_2419 0.86 +0.2
2,903,347 - Shewana3_2419 0.86 +0.5
2,903,347 - Shewana3_2419 0.86 -0.9
2,903,638 - Shewana3_2420 0.10 -0.9
2,903,661 + Shewana3_2420 0.14 -0.4
2,904,018 + Shewana3_2420 0.78 +0.1
2,904,023 + Shewana3_2420 0.79 +0.6
2,904,468 - Shewana3_2421 0.40 -0.4
2,904,542 + Shewana3_2421 0.52 -1.2
2,904,608 - Shewana3_2421 0.63 +0.4
2,904,722 - Shewana3_2421 0.82 -1.6
2,904,797 + +0.6
2,904,868 - -0.0
2,904,876 - +0.6
2,904,968 + -0.4
2,905,036 + +0.5
2,905,152 + Shewana3_2422 0.33 +0.2
2,905,185 - Shewana3_2422 0.45 +0.2
2,905,272 + Shewana3_2422 0.79 +0.4
2,905,641 + Shewana3_2423 0.25 -0.2
2,905,660 + Shewana3_2423 0.27 +0.2

Or see this region's nucleotide sequence