Experiment: nitrite 7.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2197 and Shewana3_2198 are separated by 340 nucleotides Shewana3_2198 and Shewana3_2199 are separated by 10 nucleotides Shewana3_2199 and Shewana3_2200 are separated by 91 nucleotides
Shewana3_2197: Shewana3_2197 - beta-lactamase domain-containing protein (RefSeq), at 2,637,057 to 2,637,953
_2197
Shewana3_2198: Shewana3_2198 - hypothetical protein (RefSeq), at 2,638,294 to 2,639,196
_2198
Shewana3_2199: Shewana3_2199 - hypothetical protein (RefSeq), at 2,639,207 to 2,639,989
_2199
Shewana3_2200: Shewana3_2200 - response regulator receiver protein (RefSeq), at 2,640,081 to 2,642,006
_2200
Position (kb)
2638
2639
2640 Strain fitness (log2 ratio)
-1
0
1
2 at 2637.345 kb on - strand, within Shewana3_2197 at 2637.460 kb on - strand, within Shewana3_2197 at 2637.496 kb on + strand, within Shewana3_2197 at 2638.065 kb on - strand at 2638.268 kb on - strand at 2638.284 kb on - strand at 2638.361 kb on - strand at 2638.633 kb on + strand, within Shewana3_2198 at 2638.641 kb on - strand, within Shewana3_2198 at 2638.706 kb on + strand, within Shewana3_2198 at 2638.783 kb on + strand, within Shewana3_2198 at 2638.966 kb on - strand, within Shewana3_2198 at 2639.169 kb on + strand at 2639.300 kb on - strand, within Shewana3_2199 at 2639.319 kb on + strand, within Shewana3_2199 at 2639.430 kb on + strand, within Shewana3_2199 at 2639.640 kb on - strand, within Shewana3_2199 at 2639.766 kb on - strand, within Shewana3_2199 at 2640.164 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 7.5 mM remove 2,637,345 - Shewana3_2197 0.32 -0.5 2,637,460 - Shewana3_2197 0.45 -1.3 2,637,496 + Shewana3_2197 0.49 +0.4 2,638,065 - +0.9 2,638,268 - +0.3 2,638,284 - -1.7 2,638,361 - +0.3 2,638,633 + Shewana3_2198 0.38 -0.3 2,638,641 - Shewana3_2198 0.38 -1.1 2,638,706 + Shewana3_2198 0.46 -0.7 2,638,783 + Shewana3_2198 0.54 +1.3 2,638,966 - Shewana3_2198 0.74 +0.3 2,639,169 + -1.4 2,639,300 - Shewana3_2199 0.12 +1.3 2,639,319 + Shewana3_2199 0.14 +0.9 2,639,430 + Shewana3_2199 0.28 +1.3 2,639,640 - Shewana3_2199 0.55 +0.6 2,639,766 - Shewana3_2199 0.71 -0.1 2,640,164 + +2.3
Or see this region's nucleotide sequence