Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2198

Experiment: nitrite 7.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2197 and Shewana3_2198 are separated by 340 nucleotidesShewana3_2198 and Shewana3_2199 are separated by 10 nucleotidesShewana3_2199 and Shewana3_2200 are separated by 91 nucleotides Shewana3_2197: Shewana3_2197 - beta-lactamase domain-containing protein (RefSeq), at 2,637,057 to 2,637,953 _2197 Shewana3_2198: Shewana3_2198 - hypothetical protein (RefSeq), at 2,638,294 to 2,639,196 _2198 Shewana3_2199: Shewana3_2199 - hypothetical protein (RefSeq), at 2,639,207 to 2,639,989 _2199 Shewana3_2200: Shewana3_2200 - response regulator receiver protein (RefSeq), at 2,640,081 to 2,642,006 _2200 Position (kb) 2638 2639 2640Strain fitness (log2 ratio) -1 0 1 2at 2637.345 kb on - strand, within Shewana3_2197at 2637.460 kb on - strand, within Shewana3_2197at 2637.496 kb on + strand, within Shewana3_2197at 2638.065 kb on - strandat 2638.268 kb on - strandat 2638.284 kb on - strandat 2638.361 kb on - strandat 2638.633 kb on + strand, within Shewana3_2198at 2638.641 kb on - strand, within Shewana3_2198at 2638.706 kb on + strand, within Shewana3_2198at 2638.783 kb on + strand, within Shewana3_2198at 2638.966 kb on - strand, within Shewana3_2198at 2639.169 kb on + strandat 2639.300 kb on - strand, within Shewana3_2199at 2639.319 kb on + strand, within Shewana3_2199at 2639.430 kb on + strand, within Shewana3_2199at 2639.640 kb on - strand, within Shewana3_2199at 2639.766 kb on - strand, within Shewana3_2199at 2640.164 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 7.5 mM
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2,637,345 - Shewana3_2197 0.32 -0.5
2,637,460 - Shewana3_2197 0.45 -1.3
2,637,496 + Shewana3_2197 0.49 +0.4
2,638,065 - +0.9
2,638,268 - +0.3
2,638,284 - -1.7
2,638,361 - +0.3
2,638,633 + Shewana3_2198 0.38 -0.3
2,638,641 - Shewana3_2198 0.38 -1.1
2,638,706 + Shewana3_2198 0.46 -0.7
2,638,783 + Shewana3_2198 0.54 +1.3
2,638,966 - Shewana3_2198 0.74 +0.3
2,639,169 + -1.4
2,639,300 - Shewana3_2199 0.12 +1.3
2,639,319 + Shewana3_2199 0.14 +0.9
2,639,430 + Shewana3_2199 0.28 +1.3
2,639,640 - Shewana3_2199 0.55 +0.6
2,639,766 - Shewana3_2199 0.71 -0.1
2,640,164 + +2.3

Or see this region's nucleotide sequence