Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2192

Experiment: nitrite 7.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2191 and Shewana3_2192 are separated by 269 nucleotidesShewana3_2192 and Shewana3_2193 are separated by 22 nucleotides Shewana3_2191: Shewana3_2191 - IS4 family transposase (RefSeq), at 2,631,322 to 2,632,935 _2191 Shewana3_2192: Shewana3_2192 - hypothetical protein (RefSeq), at 2,633,205 to 2,633,495 _2192 Shewana3_2193: Shewana3_2193 - hypothetical protein (RefSeq), at 2,633,518 to 2,633,820 _2193 Position (kb) 2633 2634Strain fitness (log2 ratio) -1 0 1 2at 2633.037 kb on + strandat 2633.390 kb on + strand, within Shewana3_2192at 2633.459 kb on - strand, within Shewana3_2192at 2633.600 kb on - strand, within Shewana3_2193at 2633.665 kb on + strand, within Shewana3_2193at 2633.665 kb on + strand, within Shewana3_2193at 2633.966 kb on + strandat 2633.966 kb on + strandat 2633.966 kb on - strandat 2633.967 kb on - strandat 2633.974 kb on - strandat 2633.985 kb on - strandat 2634.295 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 7.5 mM
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2,633,037 + -1.3
2,633,390 + Shewana3_2192 0.64 -0.7
2,633,459 - Shewana3_2192 0.87 -0.3
2,633,600 - Shewana3_2193 0.27 -1.7
2,633,665 + Shewana3_2193 0.49 +1.3
2,633,665 + Shewana3_2193 0.49 +0.0
2,633,966 + +0.3
2,633,966 + -0.1
2,633,966 - +0.1
2,633,967 - -1.1
2,633,974 - -0.2
2,633,985 - +1.1
2,634,295 - +2.3

Or see this region's nucleotide sequence