Experiment: nitrite 7.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2173 and Shewana3_2174 are separated by 66 nucleotides Shewana3_2174 and Shewana3_2175 are separated by 113 nucleotides Shewana3_2175 and Shewana3_2176 overlap by 4 nucleotides
Shewana3_2173: Shewana3_2173 - electron transport complex RsxE subunit (RefSeq), at 2,606,015 to 2,606,713
_2173
Shewana3_2174: Shewana3_2174 - DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (RefSeq), at 2,606,780 to 2,607,415
_2174
Shewana3_2175: Shewana3_2175 - phage integrase family protein (RefSeq), at 2,607,529 to 2,608,851
_2175
Shewana3_2176: Shewana3_2176 - hypothetical protein (RefSeq), at 2,608,848 to 2,610,494
_2176
Position (kb)
2607
2608
2609 Strain fitness (log2 ratio)
-1
0
1 at 2606.641 kb on + strand, within Shewana3_2173 at 2606.950 kb on + strand, within Shewana3_2174 at 2606.952 kb on + strand, within Shewana3_2174 at 2607.097 kb on + strand, within Shewana3_2174 at 2607.486 kb on - strand at 2607.621 kb on + strand at 2607.982 kb on - strand, within Shewana3_2175 at 2608.280 kb on + strand, within Shewana3_2175 at 2608.473 kb on + strand, within Shewana3_2175 at 2608.815 kb on + strand at 2608.831 kb on + strand at 2608.833 kb on + strand at 2608.841 kb on - strand at 2609.421 kb on + strand, within Shewana3_2176 at 2609.505 kb on + strand, within Shewana3_2176 at 2609.505 kb on + strand, within Shewana3_2176 at 2609.537 kb on - strand, within Shewana3_2176 at 2609.667 kb on - strand, within Shewana3_2176 at 2609.667 kb on - strand, within Shewana3_2176 at 2609.667 kb on - strand, within Shewana3_2176 at 2609.700 kb on + strand, within Shewana3_2176
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 7.5 mM remove 2,606,641 + Shewana3_2173 0.90 +0.8 2,606,950 + Shewana3_2174 0.27 +0.3 2,606,952 + Shewana3_2174 0.27 +0.3 2,607,097 + Shewana3_2174 0.50 -0.2 2,607,486 - -1.1 2,607,621 + +0.3 2,607,982 - Shewana3_2175 0.34 +1.2 2,608,280 + Shewana3_2175 0.57 -0.3 2,608,473 + Shewana3_2175 0.71 +0.7 2,608,815 + +1.2 2,608,831 + -0.8 2,608,833 + +1.2 2,608,841 - -0.8 2,609,421 + Shewana3_2176 0.35 +1.2 2,609,505 + Shewana3_2176 0.40 -0.3 2,609,505 + Shewana3_2176 0.40 -1.1 2,609,537 - Shewana3_2176 0.42 -0.1 2,609,667 - Shewana3_2176 0.50 -0.8 2,609,667 - Shewana3_2176 0.50 -0.3 2,609,667 - Shewana3_2176 0.50 +1.2 2,609,700 + Shewana3_2176 0.52 +0.2
Or see this region's nucleotide sequence