Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2152

Experiment: nitrite 7.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2151 and Shewana3_2152 are separated by 312 nucleotidesShewana3_2152 and Shewana3_2153 are separated by 185 nucleotides Shewana3_2151: Shewana3_2151 - glucose-6-phosphate 1-dehydrogenase (RefSeq), at 2,576,498 to 2,577,970 _2151 Shewana3_2152: Shewana3_2152 - DNA-binding transcriptional regulator HexR (RefSeq), at 2,578,283 to 2,579,137 _2152 Shewana3_2153: Shewana3_2153 - pyruvate kinase (RefSeq), at 2,579,323 to 2,580,762 _2153 Position (kb) 2578 2579 2580Strain fitness (log2 ratio) -2 -1 0 1at 2578.001 kb on - strandat 2578.225 kb on + strandat 2578.341 kb on + strandat 2578.382 kb on - strand, within Shewana3_2152at 2578.566 kb on - strandat 2578.617 kb on + strand, within Shewana3_2152at 2578.625 kb on - strand, within Shewana3_2152at 2578.945 kb on + strand, within Shewana3_2152at 2579.039 kb on + strand, within Shewana3_2152at 2579.180 kb on - strandat 2579.611 kb on + strand, within Shewana3_2153at 2579.767 kb on - strand, within Shewana3_2153at 2580.109 kb on + strand, within Shewana3_2153

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 7.5 mM
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2,578,001 - -0.5
2,578,225 + +0.5
2,578,341 + -0.3
2,578,382 - Shewana3_2152 0.12 +0.7
2,578,566 - +0.3
2,578,617 + Shewana3_2152 0.39 -2.1
2,578,625 - Shewana3_2152 0.40 +0.3
2,578,945 + Shewana3_2152 0.77 -1.3
2,579,039 + Shewana3_2152 0.88 -1.7
2,579,180 - -1.5
2,579,611 + Shewana3_2153 0.20 +0.4
2,579,767 - Shewana3_2153 0.31 -1.3
2,580,109 + Shewana3_2153 0.55 -0.4

Or see this region's nucleotide sequence