Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2029

Experiment: nitrite 7.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 7.5 mM
2,426,026	+		Shewana3_2028	0.18	+0.3
2,426,050	+		Shewana3_2028	0.20	-0.3
2,426,058	-		Shewana3_2028	0.20	-2.0
2,426,058	-		Shewana3_2028	0.20	-0.3
2,426,198	+		Shewana3_2028	0.32	+0.7
2,426,282	+		Shewana3_2028	0.40	+1.6
2,426,285	-		Shewana3_2028	0.40	+0.3
2,426,317	+		Shewana3_2028	0.43	-1.5
2,426,465	+		Shewana3_2028	0.55	+1.3
2,426,471	+		Shewana3_2028	0.56	+0.6
2,426,471	+		Shewana3_2028	0.56	+1.3
2,426,508	+		Shewana3_2028	0.59	-0.3
2,426,510	+		Shewana3_2028	0.59	+0.1
2,426,618	+		Shewana3_2028	0.68	-0.3
2,426,618	+		Shewana3_2028	0.68	+0.1
2,426,626	-		Shewana3_2028	0.69	+0.3
2,426,626	-		Shewana3_2028	0.69	+0.3
2,426,645	+		Shewana3_2028	0.70	+0.3
2,426,646	+		Shewana3_2028	0.70	+1.3
2,426,646	+		Shewana3_2028	0.70	+1.3
2,426,646	+		Shewana3_2028	0.70	-1.0
2,426,646	+		Shewana3_2028	0.70	-0.7
2,426,646	+		Shewana3_2028	0.70	-1.0
2,426,654	-		Shewana3_2028	0.71	-0.3
2,426,713	-		Shewana3_2028	0.76	-0.3
2,426,945	-				+1.3
2,427,136	+		Shewana3_2029	0.11	+0.3
2,427,145	-		Shewana3_2029	0.12	-1.4
2,427,145	-		Shewana3_2029	0.12	-0.7
2,427,198	-		Shewana3_2029	0.16	-0.3
2,427,198	-		Shewana3_2029	0.16	-1.3
2,427,238	-		Shewana3_2029	0.20	+1.3
2,427,239	+		Shewana3_2029	0.20	-0.3
2,427,265	+		Shewana3_2029	0.22	-0.3
2,427,333	+		Shewana3_2029	0.28	+1.3
2,427,341	-		Shewana3_2029	0.29	-1.3
2,427,420	-		Shewana3_2029	0.36	-0.3
2,427,420	-		Shewana3_2029	0.36	+0.3
2,427,420	-		Shewana3_2029	0.36	+2.9
2,427,454	+		Shewana3_2029	0.39	-0.3
2,427,544	-		Shewana3_2029	0.47	-0.3
2,427,556	+		Shewana3_2029	0.48	-0.5
2,427,579	+		Shewana3_2029	0.50	-0.3
2,427,579	+		Shewana3_2029	0.50	-0.7
2,427,579	+		Shewana3_2029	0.50	+0.3
2,427,579	+		Shewana3_2029	0.50	+1.3
2,427,582	-		Shewana3_2029	0.50	-1.0
2,427,587	-		Shewana3_2029	0.51	+1.3
2,427,587	-		Shewana3_2029	0.51	+0.3
2,427,587	-		Shewana3_2029	0.51	+1.3
2,427,587	-		Shewana3_2029	0.51	+0.3
2,427,587	-		Shewana3_2029	0.51	+2.3
2,427,587	-		Shewana3_2029	0.51	+1.3
2,427,647	-		Shewana3_2029	0.56	-0.3
2,427,694	+		Shewana3_2029	0.60	+1.3
2,427,694	+		Shewana3_2029	0.60	-2.8
2,427,694	+		Shewana3_2029	0.60	-0.0
2,427,694	+		Shewana3_2029	0.60	-0.3
2,427,725	-		Shewana3_2029	0.63	-0.3
2,427,725	-				+1.3
2,427,809	+		Shewana3_2029	0.70	+1.0
2,427,825	+		Shewana3_2029	0.72	-0.3
2,427,970	+		Shewana3_2029	0.84	+0.6
2,427,995	-		Shewana3_2029	0.87	+0.3
2,428,045	+				+1.3
2,428,045	+				-0.0
2,428,045	+				+0.3
2,428,045	+				+1.3
2,428,045	+				-1.9
2,428,054	-				-0.7
2,428,088	+				-0.3
2,428,147	+				+0.3
2,428,158	+				-0.7
2,428,158	+				+1.3
2,428,168	+				-1.5
2,428,197	+				-0.7
2,428,270	-				-0.3
2,428,276	+				-0.9
2,428,296	+				-1.0
2,428,296	+				+1.3
2,428,468	+		Shewana3_2030	0.18	+0.7
2,428,468	+		Shewana3_2030	0.18	+1.3
2,428,484	-		Shewana3_2030	0.19	+1.0
2,428,484	-		Shewana3_2030	0.19	-2.1
2,428,569	+		Shewana3_2030	0.24	+1.1
2,428,569	+		Shewana3_2030	0.24	-1.9
2,428,577	-		Shewana3_2030	0.24	+0.3
2,428,579	+		Shewana3_2030	0.24	+1.3
2,428,624	+		Shewana3_2030	0.27	-0.3
2,428,624	+		Shewana3_2030	0.27	+1.3
2,428,624	+		Shewana3_2030	0.27	-0.3
2,428,624	+		Shewana3_2030	0.27	-0.4
2,428,624	+		Shewana3_2030	0.27	+1.3
2,428,624	+		Shewana3_2030	0.27	+1.3
2,428,624	+		Shewana3_2030	0.27	-0.3
2,428,632	-		Shewana3_2030	0.27	-1.5
2,428,636	+		Shewana3_2030	0.28	-1.0
2,428,642	+		Shewana3_2030	0.28	-0.3
2,428,733	+		Shewana3_2030	0.33	-0.0
2,428,738	+		Shewana3_2030	0.33	-1.3
2,428,738	+		Shewana3_2030	0.33	+0.3
2,428,738	+		Shewana3_2030	0.33	-0.7
2,428,738	+		Shewana3_2030	0.33	+0.3
2,428,738	+				+1.3
2,428,738	+		Shewana3_2030	0.33	+1.3
2,428,738	+		Shewana3_2030	0.33	+1.3
2,428,738	+		Shewana3_2030	0.33	+1.3
2,428,738	+		Shewana3_2030	0.33	+1.3
2,428,738	+		Shewana3_2030	0.33	+0.3
2,428,738	+		Shewana3_2030	0.33	+1.3
2,428,738	+		Shewana3_2030	0.33	-0.0
2,428,738	+		Shewana3_2030	0.33	+0.3
2,428,738	+		Shewana3_2030	0.33	+0.3
2,428,738	+		Shewana3_2030	0.33	+1.3
2,428,738	+		Shewana3_2030	0.33	-0.7
2,428,738	+		Shewana3_2030	0.33	+0.6
2,428,738	+		Shewana3_2030	0.33	-0.3
2,428,738	+		Shewana3_2030	0.33	-1.0
2,428,738	+		Shewana3_2030	0.33	-0.3
2,428,738	+		Shewana3_2030	0.33	-1.3
2,428,738	+		Shewana3_2030	0.33	-0.0
2,428,738	+		Shewana3_2030	0.33	-0.9
2,428,738	+		Shewana3_2030	0.33	-0.3
2,428,738	+		Shewana3_2030	0.33	+0.3
2,428,738	+		Shewana3_2030	0.33	+0.3
2,428,738	+		Shewana3_2030	0.33	+0.3
2,428,738	+		Shewana3_2030	0.33	+1.3
2,428,738	+		Shewana3_2030	0.33	+1.3
2,428,738	+		Shewana3_2030	0.33	+0.3
2,428,738	+		Shewana3_2030	0.33	-0.3
2,428,738	+		Shewana3_2030	0.33	+0.3
2,428,738	+		Shewana3_2030	0.33	-0.3
2,428,738	+		Shewana3_2030	0.33	-1.3
2,428,738	+		Shewana3_2030	0.33	+0.3
2,428,738	+		Shewana3_2030	0.33	-0.6
2,428,738	+		Shewana3_2030	0.33	+1.3
2,428,738	+		Shewana3_2030	0.33	+1.3
2,428,746	-		Shewana3_2030	0.34	+0.3
2,428,746	-		Shewana3_2030	0.34	-0.6
2,428,746	-		Shewana3_2030	0.34	+1.3
2,428,746	-		Shewana3_2030	0.34	-0.1
2,428,746	-		Shewana3_2030	0.34	-0.9
2,428,746	-		Shewana3_2030	0.34	+0.7
2,428,746	-		Shewana3_2030	0.34	+0.3
2,428,746	-		Shewana3_2030	0.34	-0.3
2,428,746	-		Shewana3_2030	0.34	-0.0
2,428,746	-		Shewana3_2030	0.34	-0.7
2,428,746	-		Shewana3_2030	0.34	-0.3
2,428,746	-		Shewana3_2030	0.34	-0.1
2,428,746	-		Shewana3_2030	0.34	-0.7
2,428,746	-		Shewana3_2030	0.34	-2.1
2,428,746	-		Shewana3_2030	0.34	+1.3
2,428,746	-		Shewana3_2030	0.34	-1.0
2,428,746	-		Shewana3_2030	0.34	+0.3
2,428,746	-		Shewana3_2030	0.34	+1.3
2,428,746	-		Shewana3_2030	0.34	+1.3
2,428,746	-		Shewana3_2030	0.34	+0.7
2,428,746	-		Shewana3_2030	0.34	-0.3
2,428,746	-		Shewana3_2030	0.34	+0.3
2,428,746	-		Shewana3_2030	0.34	-1.5
2,428,746	-		Shewana3_2030	0.34	+0.3
2,428,746	-		Shewana3_2030	0.34	-0.3
2,428,746	-		Shewana3_2030	0.34	+0.3
2,428,746	-		Shewana3_2030	0.34	-2.0
2,428,748	+		Shewana3_2030	0.34	+3.3
2,428,818	+		Shewana3_2030	0.38	-0.3
2,428,818	+		Shewana3_2030	0.38	+0.3
2,428,863	-		Shewana3_2030	0.40	+0.3
2,428,917	+		Shewana3_2030	0.43	+1.3
2,428,917	+		Shewana3_2030	0.43	+0.3
2,428,966	+		Shewana3_2030	0.46	+1.3
2,428,966	+		Shewana3_2030	0.46	-0.5
2,428,966	+		Shewana3_2030	0.46	+0.3
2,429,019	-		Shewana3_2030	0.49	-0.3
2,429,043	-		Shewana3_2030	0.51	-0.7
2,429,126	-		Shewana3_2030	0.55	-0.3