Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2021

Experiment: nitrite 7.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 7.5 mM
2,415,187	+		Shewana3_2020	0.73	-0.3
2,415,205	+		Shewana3_2020	0.73	+0.9
2,415,212	+		Shewana3_2020	0.74	+0.3
2,415,220	-		Shewana3_2020	0.74	-0.3
2,415,220	-		Shewana3_2020	0.74	+1.3
2,415,245	+		Shewana3_2020	0.75	-0.3
2,415,245	+		Shewana3_2020	0.75	-0.7
2,415,253	-		Shewana3_2020	0.75	-0.7
2,415,253	-		Shewana3_2020	0.75	+1.3
2,415,253	-		Shewana3_2020	0.75	+0.3
2,415,327	-		Shewana3_2020	0.77	-0.7
2,415,343	+		Shewana3_2020	0.78	+0.3
2,415,343	+		Shewana3_2020	0.78	-1.0
2,415,344	+		Shewana3_2020	0.78	-2.0
2,415,344	+		Shewana3_2020	0.78	-0.3
2,415,344	+		Shewana3_2020	0.78	+1.3
2,415,351	-		Shewana3_2020	0.78	-0.7
2,415,352	-		Shewana3_2020	0.78	-1.3
2,415,352	-		Shewana3_2020	0.78	+1.3
2,415,352	-		Shewana3_2020	0.78	-0.3
2,415,352	-		Shewana3_2020	0.78	+0.3
2,415,352	-		Shewana3_2020	0.78	+0.3
2,415,450	+		Shewana3_2020	0.81	+1.3
2,415,450	+		Shewana3_2020	0.81	+0.3
2,415,450	+		Shewana3_2020	0.81	+0.3
2,415,458	-		Shewana3_2020	0.81	-2.0
2,415,458	-		Shewana3_2020	0.81	-1.0
2,415,528	-		Shewana3_2020	0.84	-1.2
2,415,616	+		Shewana3_2020	0.87	+0.3
2,415,626	+		Shewana3_2020	0.87	-1.0
2,415,626	+		Shewana3_2020	0.87	+0.3
2,415,631	+		Shewana3_2020	0.87	+0.3
2,415,631	+		Shewana3_2020	0.87	+3.3
2,415,631	+		Shewana3_2020	0.87	+0.4
2,415,639	-		Shewana3_2020	0.87	-0.3
2,415,671	+		Shewana3_2020	0.88	-0.3
2,415,677	+		Shewana3_2020	0.89	-1.3
2,415,677	+		Shewana3_2020	0.89	-0.4
2,415,677	+		Shewana3_2020	0.89	+0.3
2,415,677	+		Shewana3_2020	0.89	-2.3
2,415,677	+		Shewana3_2020	0.89	+1.7
2,415,677	+		Shewana3_2020	0.89	+1.7
2,415,677	+		Shewana3_2020	0.89	-1.9
2,415,677	+		Shewana3_2020	0.89	+0.7
2,415,677	+		Shewana3_2020	0.89	-1.0
2,415,677	+		Shewana3_2020	0.89	-0.5
2,415,677	+		Shewana3_2020	0.89	+1.3
2,415,677	+		Shewana3_2020	0.89	+0.3
2,415,677	+		Shewana3_2020	0.89	+0.3
2,415,677	+		Shewana3_2020	0.89	+0.3
2,415,677	+		Shewana3_2020	0.89	+0.1
2,415,677	+		Shewana3_2020	0.89	-0.7
2,415,677	+		Shewana3_2020	0.89	+0.6
2,415,677	+		Shewana3_2020	0.89	+1.3
2,415,677	+		Shewana3_2020	0.89	+0.3
2,415,677	+		Shewana3_2020	0.89	+0.9
2,415,685	-		Shewana3_2020	0.89	-0.7
2,415,685	-		Shewana3_2020	0.89	-0.7
2,415,685	-		Shewana3_2020	0.89	+1.3
2,415,685	-		Shewana3_2020	0.89	-0.3
2,415,685	-		Shewana3_2020	0.89	-0.3
2,415,686	-		Shewana3_2020	0.89	+0.3
2,415,689	+		Shewana3_2020	0.89	-0.4
2,415,700	+		Shewana3_2020	0.89	+0.3
2,415,701	+		Shewana3_2020	0.89	+0.3
2,415,701	+		Shewana3_2020	0.89	+1.3
2,415,708	-		Shewana3_2020	0.89	+1.3
2,415,708	-		Shewana3_2020	0.89	+0.3
2,415,784	-				-0.7
2,415,801	+				-0.5
2,415,843	+				-0.3
2,415,953	+				+0.6
2,415,953	+				-0.3
2,415,958	+				-0.3
2,415,958	+				-0.3
2,415,958	+				+0.3
2,415,958	+				-0.7
2,415,960	+				+0.3
2,415,966	-				+0.3
2,415,968	-				+0.0
2,416,172	-				+1.3
2,416,187	-				-1.5
2,416,232	+				+0.3
2,416,268	+		Shewana3_2021	0.12	+0.3
2,416,268	+		Shewana3_2021	0.12	+0.3
2,416,270	+		Shewana3_2021	0.12	+0.3
2,416,299	+		Shewana3_2021	0.16	+0.3
2,416,299	+		Shewana3_2021	0.16	-0.3
2,416,307	-		Shewana3_2021	0.16	+1.3
2,416,312	+		Shewana3_2021	0.17	-0.5
2,416,372	+		Shewana3_2021	0.24	-1.7
2,416,372	+		Shewana3_2021	0.24	+1.3
2,416,372	+		Shewana3_2021	0.24	+0.3
2,416,380	-		Shewana3_2021	0.25	-0.3
2,416,380	-		Shewana3_2021	0.25	-0.3
2,416,398	-		Shewana3_2021	0.27	-0.2
2,416,398	-		Shewana3_2021	0.27	-1.3
2,416,410	+		Shewana3_2021	0.28	+0.3
2,416,410	+		Shewana3_2021	0.28	+0.3
2,416,425	-		Shewana3_2021	0.30	-0.3
2,416,426	-		Shewana3_2021	0.30	-0.3
2,416,431	-		Shewana3_2021	0.31	+0.3
2,416,431	-		Shewana3_2021	0.31	-1.3
2,416,431	-		Shewana3_2021	0.31	-0.3
2,416,431	-		Shewana3_2021	0.31	-0.7
2,416,431	-		Shewana3_2021	0.31	-0.7
2,416,432	-		Shewana3_2021	0.31	-0.7
2,416,434	+		Shewana3_2021	0.31	-0.0
2,416,436	-		Shewana3_2021	0.31	+1.3
2,416,436	-		Shewana3_2021	0.31	-0.7
2,416,442	-		Shewana3_2021	0.32	+0.3
2,416,507	+		Shewana3_2021	0.40	-0.3
2,416,507	+		Shewana3_2021	0.40	-1.3
2,416,515	-		Shewana3_2021	0.41	-0.7
2,416,515	-		Shewana3_2021	0.41	-0.4
2,416,520	-		Shewana3_2021	0.41	+1.3
2,416,530	+		Shewana3_2021	0.42	-1.0
2,416,530	+		Shewana3_2021	0.42	+1.3
2,416,540	+		Shewana3_2021	0.43	+0.7
2,416,541	+		Shewana3_2021	0.44	+0.7
2,416,548	-		Shewana3_2021	0.44	-1.5
2,416,548	-		Shewana3_2021	0.44	+0.3
2,416,549	-		Shewana3_2021	0.44	+1.4
2,416,549	-		Shewana3_2021	0.44	+0.2
2,416,549	-		Shewana3_2021	0.44	+0.3
2,416,572	-		Shewana3_2021	0.47	+1.3
2,416,572	-		Shewana3_2021	0.47	+0.3
2,416,580	+		Shewana3_2021	0.48	+1.3
2,416,586	-		Shewana3_2021	0.49	+0.3
2,416,586	-		Shewana3_2021	0.49	+1.3
2,416,586	-		Shewana3_2021	0.49	+0.3
2,416,586	-		Shewana3_2021	0.49	+0.3
2,416,586	-		Shewana3_2021	0.49	+0.3
2,416,586	-		Shewana3_2021	0.49	+1.3
2,416,598	-		Shewana3_2021	0.50	+1.3
2,416,612	+		Shewana3_2021	0.52	+0.3
2,416,631	-		Shewana3_2021	0.54	+0.3
2,416,631	-		Shewana3_2021	0.54	-0.7
2,416,635	+		Shewana3_2021	0.54	+0.3
2,416,635	+		Shewana3_2021	0.54	-0.7
2,416,643	-		Shewana3_2021	0.55	-1.5
2,416,643	-		Shewana3_2021	0.55	-1.9
2,416,693	+		Shewana3_2021	0.61	+0.3
2,416,693	+		Shewana3_2021	0.61	-0.3
2,416,693	+		Shewana3_2021	0.61	+1.3
2,416,693	+		Shewana3_2021	0.61	+0.3
2,416,693	+		Shewana3_2021	0.61	-0.7
2,416,693	+		Shewana3_2021	0.61	-0.8
2,416,694	+		Shewana3_2021	0.61	-0.6
2,416,694	+		Shewana3_2021	0.61	+1.9
2,416,701	-		Shewana3_2021	0.62	-1.3
2,416,702	-		Shewana3_2021	0.62	+2.3
2,416,702	-		Shewana3_2021	0.62	-1.0
2,416,718	+		Shewana3_2021	0.64	-0.6
2,416,718	+		Shewana3_2021	0.64	-0.3
2,416,718	+		Shewana3_2021	0.64	+1.3
2,416,718	+		Shewana3_2021	0.64	+0.3
2,416,718	+		Shewana3_2021	0.64	-0.7
2,416,718	+		Shewana3_2021	0.64	+1.3
2,416,726	-		Shewana3_2021	0.65	+0.3
2,416,726	-		Shewana3_2021	0.65	-0.3
2,416,726	-		Shewana3_2021	0.65	+1.3
2,416,726	-		Shewana3_2021	0.65	+1.3
2,416,728	-		Shewana3_2021	0.65	+0.3
2,416,764	+		Shewana3_2021	0.69	-0.3
2,416,795	-		Shewana3_2021	0.73	-1.7
2,416,795	-		Shewana3_2021	0.73	-2.2
2,416,805	-		Shewana3_2021	0.74	+0.4
2,416,813	-		Shewana3_2021	0.75	-0.0
2,416,836	+		Shewana3_2021	0.78	-0.7
2,416,849	-		Shewana3_2021	0.79	+1.3
2,416,849	-		Shewana3_2021	0.79	-0.7
2,416,854	+		Shewana3_2021	0.80	-0.7
2,416,875	+		Shewana3_2021	0.82	+1.3
2,416,881	+		Shewana3_2021	0.83	-0.3
2,416,882	+		Shewana3_2021	0.83	+0.3
2,416,882	+		Shewana3_2021	0.83	+1.3
2,416,882	+		Shewana3_2021	0.83	+1.3
2,416,882	+		Shewana3_2021	0.83	-1.3
2,416,890	-		Shewana3_2021	0.84	+0.1
2,416,890	-		Shewana3_2021	0.84	+0.3
2,416,890	-		Shewana3_2021	0.84	+1.3
2,416,890	-		Shewana3_2021	0.84	+1.3
2,416,890	-		Shewana3_2021	0.84	-0.3
2,416,890	-		Shewana3_2021	0.84	+0.3
2,416,890	-		Shewana3_2021	0.84	-1.9
2,416,890	-		Shewana3_2021	0.84	+1.9
2,416,900	-		Shewana3_2021	0.85	+1.3
2,416,914	+		Shewana3_2021	0.87	-1.5
2,416,916	+		Shewana3_2021	0.87	-1.5
2,416,922	-		Shewana3_2021	0.88	+1.3
2,416,989	+				-0.8
2,417,006	-				-0.4
2,417,012	+				+0.3
2,417,020	-				-0.3
2,417,020	-				+0.3
2,417,020	-				-1.5
2,417,020	-				-0.3
2,417,026	+				-1.3
2,417,026	+				-0.3
2,417,034	-				-0.0
2,417,034	-				+2.6
2,417,060	-				-0.4
2,417,089	+				+0.5
2,417,104	+				-0.3
2,417,113	+				+0.3
2,417,120	+				-1.7
2,417,128	-				+0.6
2,417,150	+		Shewana3_2022	0.11	+0.3
2,417,158	-		Shewana3_2022	0.11	+0.0
2,417,175	+		Shewana3_2022	0.13	+0.3
2,417,183	+		Shewana3_2022	0.13	-0.7
2,417,201	+		Shewana3_2022	0.15	-1.3
2,417,201	+		Shewana3_2022	0.15	+1.3
2,417,201	+		Shewana3_2022	0.15	+1.3
2,417,201	+		Shewana3_2022	0.15	-1.0
2,417,207	-		Shewana3_2022	0.15	+0.7
2,417,209	-		Shewana3_2022	0.15	-0.4
2,417,209	-		Shewana3_2022	0.15	-0.8
2,417,209	-		Shewana3_2022	0.15	+1.3
2,417,211	+		Shewana3_2022	0.16	-0.3
2,417,216	+		Shewana3_2022	0.16	+1.3
2,417,216	+		Shewana3_2022	0.16	+0.3
2,417,224	-		Shewana3_2022	0.17	+1.0
2,417,261	+		Shewana3_2022	0.20	-0.3
2,417,269	-		Shewana3_2022	0.20	-0.3
2,417,310	-		Shewana3_2022	0.24	+0.5
2,417,310	-		Shewana3_2022	0.24	-0.0
2,417,310	-		Shewana3_2022	0.24	-1.0
2,417,312	-		Shewana3_2022	0.24	-0.3
2,417,315	-		Shewana3_2022	0.24	-0.7
2,417,340	-		Shewana3_2022	0.26	-2.5
2,417,424	+		Shewana3_2022	0.33	-0.3
2,417,432	-		Shewana3_2022	0.34	-0.4
2,417,516	+		Shewana3_2022	0.40	+1.3
2,417,518	+		Shewana3_2022	0.41	+0.3
2,417,534	-		Shewana3_2022	0.42	+0.8
2,417,534	-		Shewana3_2022	0.42	+0.3
2,417,536	-		Shewana3_2022	0.42	-1.9
2,417,668	+		Shewana3_2022	0.53	+0.3
2,417,668	+		Shewana3_2022	0.53	-0.7
2,417,668	+		Shewana3_2022	0.53	+0.3
2,417,676	-		Shewana3_2022	0.54	-0.3
2,417,684	+		Shewana3_2022	0.54	+0.3
2,417,684	+		Shewana3_2022	0.54	+0.3
2,417,772	+		Shewana3_2022	0.61	+0.3
2,417,772	+		Shewana3_2022	0.61	+0.3
2,417,772	+		Shewana3_2022	0.61	-0.3
2,417,780	-		Shewana3_2022	0.62	+0.0
2,417,780	-		Shewana3_2022	0.62	+0.3
2,417,780	-		Shewana3_2022	0.62	-1.7
2,417,793	+		Shewana3_2022	0.63	-0.7
2,417,801	-		Shewana3_2022	0.64	-0.3
2,417,802	-		Shewana3_2022	0.64	+0.3
2,417,840	-		Shewana3_2022	0.67	-0.3
2,417,851	-		Shewana3_2022	0.68	+1.3
2,417,945	-		Shewana3_2022	0.75	-0.1
2,417,982	+		Shewana3_2022	0.79	+1.3
2,417,989	-		Shewana3_2022	0.79	+1.3
2,418,011	+		Shewana3_2022	0.81	+0.6
2,418,011	-		Shewana3_2022	0.81	-0.3
2,418,026	-		Shewana3_2022	0.82	-2.1