Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2019

Experiment: nitrite 7.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 7.5 mM
2,409,462	-				-1.0
2,409,601	-				+0.3
2,409,675	-				-1.5
2,409,821	+				+1.9
2,409,821	+				+0.9
2,409,821	+				+0.1
2,409,821	+				+1.6
2,409,821	+				+0.6
2,409,821	+				+1.3
2,409,821	+				+0.8
2,409,829	-				+0.6
2,409,829	-				+1.3
2,409,829	-				+1.3
2,409,829	-				+0.9
2,409,829	-				-0.3
2,409,829	-				-2.3
2,409,829	-				-0.7
2,409,829	-				+0.3
2,409,829	-				+0.7
2,409,829	-				-0.3
2,410,013	+		Shewana3_2018	0.31	-0.8
2,410,014	+		Shewana3_2018	0.31	+1.0
2,410,022	-		Shewana3_2018	0.32	-0.7
2,410,022	-		Shewana3_2018	0.32	-1.5
2,410,022	-		Shewana3_2018	0.32	-0.7
2,410,048	-		Shewana3_2018	0.37	-0.1
2,410,059	+		Shewana3_2018	0.39	+1.3
2,410,064	+		Shewana3_2018	0.40	-2.4
2,410,067	-		Shewana3_2018	0.40	-0.9
2,410,112	-		Shewana3_2018	0.48	-0.5
2,410,243	+		Shewana3_2018	0.70	+0.3
2,410,260	+		Shewana3_2018	0.73	+2.0
2,410,268	-		Shewana3_2018	0.75	-0.7
2,410,285	+		Shewana3_2018	0.78	+0.3
2,410,285	+		Shewana3_2018	0.78	-0.3
2,410,285	+		Shewana3_2018	0.78	-0.3
2,410,285	+		Shewana3_2018	0.78	+0.3
2,410,285	+		Shewana3_2018	0.78	-1.3
2,410,285	+		Shewana3_2018	0.78	+0.3
2,410,285	+		Shewana3_2018	0.78	+1.6
2,410,285	+		Shewana3_2018	0.78	+0.9
2,410,285	+		Shewana3_2018	0.78	-0.3
2,410,285	+		Shewana3_2018	0.78	-0.3
2,410,285	+		Shewana3_2018	0.78	+1.3
2,410,286	-		Shewana3_2018	0.78	-0.7
2,410,293	-		Shewana3_2018	0.79	-0.7
2,410,293	-		Shewana3_2018	0.79	+1.3
2,410,293	-		Shewana3_2018	0.79	+1.3
2,410,293	-		Shewana3_2018	0.79	+1.3
2,410,293	-		Shewana3_2018	0.79	+0.3
2,410,293	-		Shewana3_2018	0.79	+0.3
2,410,387	-				-0.3
2,410,426	-				-1.0
2,410,432	-				+1.3
2,410,486	+				+0.3
2,410,502	+				-1.5
2,410,558	-				+1.3
2,410,566	-				+1.3
2,410,624	+				+0.3
2,410,632	-				-1.5
2,410,637	-				-1.7
2,410,794	-		Shewana3_2019	0.15	+2.3
2,410,799	+		Shewana3_2019	0.15	-1.0
2,410,816	+		Shewana3_2019	0.16	+1.3
2,410,817	-		Shewana3_2019	0.16	+0.3
2,410,830	+		Shewana3_2019	0.16	+1.3
2,410,838	-		Shewana3_2019	0.17	-1.0
2,410,859	+		Shewana3_2019	0.18	-0.3
2,410,859	+		Shewana3_2019	0.18	+0.4
2,410,867	-		Shewana3_2019	0.18	+0.1
2,410,867	-		Shewana3_2019	0.18	+0.3
2,410,894	+		Shewana3_2019	0.19	+0.3
2,410,894	+		Shewana3_2019	0.19	+0.7
2,410,904	+		Shewana3_2019	0.19	+0.3
2,410,945	+		Shewana3_2019	0.21	-0.7
2,411,049	-		Shewana3_2019	0.25	+0.3
2,411,156	+		Shewana3_2019	0.29	-0.3
2,411,236	+		Shewana3_2019	0.32	-0.3
2,411,244	-		Shewana3_2019	0.33	+0.9
2,411,245	+		Shewana3_2019	0.33	-0.7
2,411,255	+		Shewana3_2019	0.33	-1.3
2,411,263	-		Shewana3_2019	0.34	+0.6
2,411,288	+				+1.3
2,411,288	+		Shewana3_2019	0.35	+0.3
2,411,300	+		Shewana3_2019	0.35	+0.7
2,411,306	-		Shewana3_2019	0.35	-0.3
2,411,330	+		Shewana3_2019	0.36	-0.5
2,411,371	+		Shewana3_2019	0.38	+0.3
2,411,371	+		Shewana3_2019	0.38	+0.3
2,411,371	+		Shewana3_2019	0.38	-0.3
2,411,371	+		Shewana3_2019	0.38	-0.0
2,411,376	+		Shewana3_2019	0.38	-0.3
2,411,384	-		Shewana3_2019	0.38	-1.3
2,411,384	-		Shewana3_2019	0.38	+0.3
2,411,409	-		Shewana3_2019	0.39	+0.1
2,411,683	+		Shewana3_2019	0.50	-1.5
2,411,688	+		Shewana3_2019	0.50	-0.3
2,411,688	+		Shewana3_2019	0.50	-0.3
2,411,689	+		Shewana3_2019	0.50	-0.3
2,411,699	+		Shewana3_2019	0.51	+0.3
2,411,700	+		Shewana3_2019	0.51	+1.3
2,411,700	+				-0.3
2,411,702	+		Shewana3_2019	0.51	+1.3
2,411,702	+		Shewana3_2019	0.51	-0.3
2,411,708	-		Shewana3_2019	0.51	+0.3
2,411,723	+		Shewana3_2019	0.52	-0.3
2,411,868	-		Shewana3_2019	0.57	-1.0
2,411,877	-		Shewana3_2019	0.58	-0.3
2,411,892	+		Shewana3_2019	0.58	+0.7
2,411,893	-		Shewana3_2019	0.58	+0.3
2,411,918	+		Shewana3_2019	0.59	+1.3
2,411,951	+		Shewana3_2019	0.61	-1.0
2,411,956	+		Shewana3_2019	0.61	+0.3
2,411,964	-		Shewana3_2019	0.61	-0.3
2,411,971	+		Shewana3_2019	0.61	-0.7
2,411,971	+		Shewana3_2019	0.61	-0.0
2,411,971	+		Shewana3_2019	0.61	-1.0
2,412,005	+		Shewana3_2019	0.63	+1.3
2,412,005	+		Shewana3_2019	0.63	-0.3
2,412,013	-		Shewana3_2019	0.63	+0.3
2,412,013	-		Shewana3_2019	0.63	-1.0
2,412,037	-		Shewana3_2019	0.64	-0.3
2,412,093	+		Shewana3_2019	0.66	+1.3
2,412,093	+		Shewana3_2019	0.66	+1.3
2,412,101	-		Shewana3_2019	0.67	-0.3
2,412,206	+		Shewana3_2019	0.71	+0.3
2,412,214	+		Shewana3_2019	0.71	-1.5
2,412,214	-		Shewana3_2019	0.71	+1.3
2,412,221	+		Shewana3_2019	0.71	-0.7
2,412,221	+		Shewana3_2019	0.71	-0.7
2,412,221	+		Shewana3_2019	0.71	+0.3
2,412,247	+		Shewana3_2019	0.72	-0.7
2,412,247	+		Shewana3_2019	0.72	-0.0
2,412,283	+		Shewana3_2019	0.74	-0.3
2,412,283	+		Shewana3_2019	0.74	-0.3
2,412,283	+		Shewana3_2019	0.74	+0.3
2,412,290	-		Shewana3_2019	0.74	+0.3
2,412,292	+		Shewana3_2019	0.74	+1.3
2,412,292	+		Shewana3_2019	0.74	-1.1
2,412,292	+		Shewana3_2019	0.74	+1.3
2,412,323	-		Shewana3_2019	0.75	+0.3
2,412,323	-				+1.3
2,412,328	+		Shewana3_2019	0.75	-0.3
2,412,328	+		Shewana3_2019	0.75	+1.3
2,412,328	+		Shewana3_2019	0.75	-0.9
2,412,355	+		Shewana3_2019	0.77	+0.3
2,412,357	+		Shewana3_2019	0.77	-0.7
2,412,374	+		Shewana3_2019	0.77	-1.7
2,412,417	+		Shewana3_2019	0.79	+1.3
2,412,475	+		Shewana3_2019	0.81	-0.3
2,412,520	+		Shewana3_2019	0.83	+1.3
2,412,532	+		Shewana3_2019	0.83	+1.3
2,412,542	+		Shewana3_2019	0.84	+1.3
2,412,597	+		Shewana3_2019	0.86	+0.4
2,412,597	+		Shewana3_2019	0.86	+0.5
2,412,597	+		Shewana3_2019	0.86	-1.4
2,412,658	+		Shewana3_2019	0.88	-0.3
2,412,667	-		Shewana3_2019	0.89	+0.3
2,412,686	-		Shewana3_2019	0.90	+1.3
2,412,689	+		Shewana3_2019	0.90	-0.7
2,412,689	+		Shewana3_2019	0.90	-1.0
2,412,689	+		Shewana3_2019	0.90	-0.3
2,412,697	-		Shewana3_2019	0.90	+0.3
2,412,704	+				+1.3
2,412,712	-				+1.3
2,412,713	-				+0.3
2,412,732	+				+0.3
2,412,732	+				-0.5
2,412,732	+				-0.7
2,412,737	+				-1.3
2,412,740	-				+0.3
2,412,742	+				-0.3
2,412,811	+				-1.7
2,412,811	+				+0.2
2,412,811	+				-0.9
2,412,835	+				-0.8
2,412,838	+				-0.9
2,412,838	+				-0.0
2,412,838	+				+1.9
2,412,843	-				-1.0
2,412,843	-				-0.3
2,412,843	-				+0.7
2,412,846	+				-1.0
2,412,846	-				+1.3
2,412,848	+				+0.2
2,412,851	-				+2.0
2,412,851	-				+0.7
2,412,853	+				+1.3
2,412,853	+				+2.0
2,412,853	+				-0.7
2,412,853	+				-0.2
2,412,853	+				+1.0
2,412,856	-				+0.3
2,412,856	-				-1.0
2,412,856	-				-1.0
2,412,861	-				+0.6
2,412,861	-				+0.6
2,412,861	-				-0.3
2,412,861	-				-0.3
2,412,861	-				-1.7
2,412,874	+				+0.5
2,412,887	+				-0.7
2,412,906	+				+1.3
2,412,906	+				-0.5
2,412,906	+				-1.0
2,412,906	+				-0.5
2,412,913	-				-0.1
2,412,977	-				+0.3
2,413,033	+				+1.3
2,413,041	-				-0.3
2,413,041	-				+0.3
2,413,043	+				-2.5
2,413,051	-				-0.7
2,413,051	-				+0.3
2,413,051	-				-0.3
2,413,051	-				-1.7
2,413,051	-				+1.3
2,413,051	-				+1.3
2,413,051	-				+0.7
2,413,051	-				+1.3
2,413,051	-				-1.3
2,413,177	+				+0.3
2,413,224	+				-1.0
2,413,224	+				-0.7
2,413,226	+				+1.3
2,413,232	-				+1.3
2,413,300	+		Shewana3_2020	0.12	-0.5
2,413,300	+		Shewana3_2020	0.12	-0.9
2,413,308	-		Shewana3_2020	0.12	-1.0
2,413,349	+		Shewana3_2020	0.14	-1.9
2,413,349	+		Shewana3_2020	0.14	-0.7
2,413,349	+		Shewana3_2020	0.14	-1.0
2,413,349	+		Shewana3_2020	0.14	+0.3
2,413,349	+		Shewana3_2020	0.14	-0.9
2,413,349	+		Shewana3_2020	0.14	-0.5
2,413,349	+		Shewana3_2020	0.14	-0.3
2,413,349	+		Shewana3_2020	0.14	-1.0
2,413,357	-		Shewana3_2020	0.14	-1.5
2,413,357	-		Shewana3_2020	0.14	+0.3
2,413,357	-		Shewana3_2020	0.14	-1.0
2,413,359	+		Shewana3_2020	0.14	-1.3
2,413,369	-		Shewana3_2020	0.14	+0.3
2,413,373	+		Shewana3_2020	0.15	+1.9
2,413,377	+		Shewana3_2020	0.15	-1.9
2,413,383	+		Shewana3_2020	0.15	-0.7
2,413,385	-		Shewana3_2020	0.15	-0.3
2,413,387	+		Shewana3_2020	0.15	-2.2
2,413,387	+		Shewana3_2020	0.15	-0.8
2,413,391	+		Shewana3_2020	0.15	-0.5
2,413,399	+		Shewana3_2020	0.15	+2.0
2,413,399	-		Shewana3_2020	0.15	+1.3
2,413,406	+		Shewana3_2020	0.16	+2.3
2,413,410	+		Shewana3_2020	0.16	-0.7
2,413,444	+		Shewana3_2020	0.17	+0.3
2,413,444	+		Shewana3_2020	0.17	-1.3
2,413,444	+		Shewana3_2020	0.17	-0.3
2,413,444	+		Shewana3_2020	0.17	-0.5
2,413,444	+		Shewana3_2020	0.17	+0.7
2,413,444	+		Shewana3_2020	0.17	+0.3
2,413,444	+		Shewana3_2020	0.17	-1.0
2,413,452	-		Shewana3_2020	0.17	+1.3
2,413,457	-		Shewana3_2020	0.17	+1.3
2,413,536	+		Shewana3_2020	0.20	-1.4
2,413,536	+		Shewana3_2020	0.20	-1.3
2,413,541	+		Shewana3_2020	0.20	-1.7
2,413,541	+		Shewana3_2020	0.20	+1.3
2,413,541	+		Shewana3_2020	0.20	+1.3
2,413,559	-		Shewana3_2020	0.20	+1.3
2,413,592	-		Shewana3_2020	0.22	-0.3
2,413,600	+		Shewana3_2020	0.22	-1.0
2,413,734	+		Shewana3_2020	0.26	-0.3
2,413,742	+		Shewana3_2020	0.26	-0.0
2,413,747	+		Shewana3_2020	0.27	-0.3
2,413,747	+		Shewana3_2020	0.27	+2.3
2,413,747	+		Shewana3_2020	0.27	-0.7
2,413,747	+		Shewana3_2020	0.27	+1.3
2,413,747	+		Shewana3_2020	0.27	-0.9
2,413,747	+		Shewana3_2020	0.27	-0.7
2,413,761	-		Shewana3_2020	0.27	-1.7
2,413,763	+		Shewana3_2020	0.27	+0.5
2,413,763	+		Shewana3_2020	0.27	-0.5
2,413,763	+		Shewana3_2020	0.27	+1.0
2,413,763	+		Shewana3_2020	0.27	-0.3
2,413,764	+		Shewana3_2020	0.27	-0.7
2,413,765	+		Shewana3_2020	0.27	-0.5
2,413,775	+		Shewana3_2020	0.27	+1.3
2,413,775	+		Shewana3_2020	0.27	+0.6
2,413,775	+		Shewana3_2020	0.27	-0.3
2,413,786	+		Shewana3_2020	0.28	-1.0
2,413,786	+		Shewana3_2020	0.28	-0.7
2,413,789	-		Shewana3_2020	0.28	+2.3
2,413,790	+		Shewana3_2020	0.28	+0.3
2,413,790	+		Shewana3_2020	0.28	+0.9
2,413,790	+		Shewana3_2020	0.28	-0.3
2,413,790	+		Shewana3_2020	0.28	-0.3
2,413,790	+		Shewana3_2020	0.28	+0.3
2,413,790	+		Shewana3_2020	0.28	+1.6
2,413,790	+		Shewana3_2020	0.28	-1.0
2,413,791	+		Shewana3_2020	0.28	-0.8
2,413,798	-		Shewana3_2020	0.28	+0.3
2,413,798	-		Shewana3_2020	0.28	-0.3
2,413,798	-		Shewana3_2020	0.28	+0.3
2,413,800	+		Shewana3_2020	0.28	-2.5
2,413,814	+		Shewana3_2020	0.29	+0.3
2,413,827	+		Shewana3_2020	0.29	+1.3
2,413,827	+		Shewana3_2020	0.29	+0.3
2,413,835	-		Shewana3_2020	0.29	+1.3
2,413,858	+		Shewana3_2020	0.30	-1.7
2,413,879	+		Shewana3_2020	0.31	+0.3
2,413,879	+		Shewana3_2020	0.31	+0.6
2,413,889	+		Shewana3_2020	0.31	-1.7
2,413,889	+		Shewana3_2020	0.31	-2.2
2,413,889	+		Shewana3_2020	0.31	+0.3
2,413,897	-		Shewana3_2020	0.31	+0.3