Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1951

Experiment: nitrite 7.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1950 and Shewana3_1951 overlap by 4 nucleotidesShewana3_1951 and Shewana3_1952 are separated by 121 nucleotides Shewana3_1950: Shewana3_1950 - putative methyltransferase (RefSeq), at 2,319,245 to 2,320,237 _1950 Shewana3_1951: Shewana3_1951 - putative methyltransferase (RefSeq), at 2,320,234 to 2,320,992 _1951 Shewana3_1952: Shewana3_1952 - diguanylate cyclase (RefSeq), at 2,321,114 to 2,323,927 _1952 Position (kb) 2320 2321Strain fitness (log2 ratio) -3 -2 -1 0 1at 2319.257 kb on - strandat 2319.314 kb on - strandat 2319.399 kb on - strand, within Shewana3_1950at 2319.433 kb on - strand, within Shewana3_1950at 2319.448 kb on + strand, within Shewana3_1950at 2319.456 kb on - strand, within Shewana3_1950at 2319.571 kb on - strand, within Shewana3_1950at 2319.584 kb on - strand, within Shewana3_1950at 2319.686 kb on + strand, within Shewana3_1950at 2319.811 kb on + strand, within Shewana3_1950at 2319.887 kb on - strand, within Shewana3_1950at 2319.887 kb on - strand, within Shewana3_1950at 2320.041 kb on - strand, within Shewana3_1950at 2320.083 kb on + strand, within Shewana3_1950at 2320.297 kb on + strandat 2320.334 kb on - strand, within Shewana3_1951at 2320.406 kb on + strand, within Shewana3_1951at 2320.505 kb on - strand, within Shewana3_1951at 2320.540 kb on - strand, within Shewana3_1951at 2320.568 kb on - strand, within Shewana3_1951at 2320.857 kb on - strand, within Shewana3_1951at 2321.181 kb on + strandat 2321.193 kb on - strandat 2321.268 kb on - strandat 2321.323 kb on - strandat 2321.409 kb on + strand, within Shewana3_1952at 2321.437 kb on + strand, within Shewana3_1952at 2321.460 kb on + strand, within Shewana3_1952at 2321.761 kb on + strand, within Shewana3_1952at 2321.790 kb on + strand, within Shewana3_1952at 2321.795 kb on + strand, within Shewana3_1952

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 7.5 mM
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2,319,257 - +1.0
2,319,314 - +0.1
2,319,399 - Shewana3_1950 0.16 -0.6
2,319,433 - Shewana3_1950 0.19 +0.3
2,319,448 + Shewana3_1950 0.20 +0.3
2,319,456 - Shewana3_1950 0.21 +0.4
2,319,571 - Shewana3_1950 0.33 -0.1
2,319,584 - Shewana3_1950 0.34 +0.3
2,319,686 + Shewana3_1950 0.44 -0.9
2,319,811 + Shewana3_1950 0.57 +0.3
2,319,887 - Shewana3_1950 0.65 -0.1
2,319,887 - Shewana3_1950 0.65 -0.0
2,320,041 - Shewana3_1950 0.80 +0.3
2,320,083 + Shewana3_1950 0.84 -0.7
2,320,297 + -0.3
2,320,334 - Shewana3_1951 0.13 -0.0
2,320,406 + Shewana3_1951 0.23 -0.3
2,320,505 - Shewana3_1951 0.36 +0.1
2,320,540 - Shewana3_1951 0.40 -1.6
2,320,568 - Shewana3_1951 0.44 +0.2
2,320,857 - Shewana3_1951 0.82 -1.0
2,321,181 + +0.5
2,321,193 - +1.5
2,321,268 - -2.2
2,321,323 - +0.7
2,321,409 + Shewana3_1952 0.10 +0.6
2,321,437 + Shewana3_1952 0.11 -2.8
2,321,460 + Shewana3_1952 0.12 -0.2
2,321,761 + Shewana3_1952 0.23 +0.2
2,321,790 + Shewana3_1952 0.24 +1.1
2,321,795 + Shewana3_1952 0.24 +0.7

Or see this region's nucleotide sequence