Experiment: nitrite 7.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1950 and Shewana3_1951 overlap by 4 nucleotides Shewana3_1951 and Shewana3_1952 are separated by 121 nucleotides
Shewana3_1950: Shewana3_1950 - putative methyltransferase (RefSeq), at 2,319,245 to 2,320,237
_1950
Shewana3_1951: Shewana3_1951 - putative methyltransferase (RefSeq), at 2,320,234 to 2,320,992
_1951
Shewana3_1952: Shewana3_1952 - diguanylate cyclase (RefSeq), at 2,321,114 to 2,323,927
_1952
Position (kb)
2320
2321 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2319.257 kb on - strand at 2319.314 kb on - strand at 2319.399 kb on - strand, within Shewana3_1950 at 2319.433 kb on - strand, within Shewana3_1950 at 2319.448 kb on + strand, within Shewana3_1950 at 2319.456 kb on - strand, within Shewana3_1950 at 2319.571 kb on - strand, within Shewana3_1950 at 2319.584 kb on - strand, within Shewana3_1950 at 2319.686 kb on + strand, within Shewana3_1950 at 2319.811 kb on + strand, within Shewana3_1950 at 2319.887 kb on - strand, within Shewana3_1950 at 2319.887 kb on - strand, within Shewana3_1950 at 2320.041 kb on - strand, within Shewana3_1950 at 2320.083 kb on + strand, within Shewana3_1950 at 2320.297 kb on + strand at 2320.334 kb on - strand, within Shewana3_1951 at 2320.406 kb on + strand, within Shewana3_1951 at 2320.505 kb on - strand, within Shewana3_1951 at 2320.540 kb on - strand, within Shewana3_1951 at 2320.568 kb on - strand, within Shewana3_1951 at 2320.857 kb on - strand, within Shewana3_1951 at 2321.181 kb on + strand at 2321.193 kb on - strand at 2321.268 kb on - strand at 2321.323 kb on - strand at 2321.409 kb on + strand, within Shewana3_1952 at 2321.437 kb on + strand, within Shewana3_1952 at 2321.460 kb on + strand, within Shewana3_1952 at 2321.761 kb on + strand, within Shewana3_1952 at 2321.790 kb on + strand, within Shewana3_1952 at 2321.795 kb on + strand, within Shewana3_1952
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 7.5 mM remove 2,319,257 - +1.0 2,319,314 - +0.1 2,319,399 - Shewana3_1950 0.16 -0.6 2,319,433 - Shewana3_1950 0.19 +0.3 2,319,448 + Shewana3_1950 0.20 +0.3 2,319,456 - Shewana3_1950 0.21 +0.4 2,319,571 - Shewana3_1950 0.33 -0.1 2,319,584 - Shewana3_1950 0.34 +0.3 2,319,686 + Shewana3_1950 0.44 -0.9 2,319,811 + Shewana3_1950 0.57 +0.3 2,319,887 - Shewana3_1950 0.65 -0.1 2,319,887 - Shewana3_1950 0.65 -0.0 2,320,041 - Shewana3_1950 0.80 +0.3 2,320,083 + Shewana3_1950 0.84 -0.7 2,320,297 + -0.3 2,320,334 - Shewana3_1951 0.13 -0.0 2,320,406 + Shewana3_1951 0.23 -0.3 2,320,505 - Shewana3_1951 0.36 +0.1 2,320,540 - Shewana3_1951 0.40 -1.6 2,320,568 - Shewana3_1951 0.44 +0.2 2,320,857 - Shewana3_1951 0.82 -1.0 2,321,181 + +0.5 2,321,193 - +1.5 2,321,268 - -2.2 2,321,323 - +0.7 2,321,409 + Shewana3_1952 0.10 +0.6 2,321,437 + Shewana3_1952 0.11 -2.8 2,321,460 + Shewana3_1952 0.12 -0.2 2,321,761 + Shewana3_1952 0.23 +0.2 2,321,790 + Shewana3_1952 0.24 +1.1 2,321,795 + Shewana3_1952 0.24 +0.7
Or see this region's nucleotide sequence