Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1616

Experiment: nitrite 7.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 7.5 mM
1,900,089	+		Shewana3_1615	0.76	-1.0
1,900,089	+		Shewana3_1615	0.76	+0.2
1,900,097	-		Shewana3_1615	0.79	+0.1
1,900,097	-		Shewana3_1615	0.79	-0.5
1,900,097	-		Shewana3_1615	0.79	+0.6
1,900,100	+		Shewana3_1615	0.80	-1.5
1,900,108	-		Shewana3_1615	0.83	+0.6
1,900,118	-		Shewana3_1615	0.86	-1.3
1,900,138	+				-0.9
1,900,169	-				+0.4
1,900,169	-				-0.4
1,900,312	-				+1.3
1,900,334	-				+0.3
1,900,351	+				-1.0
1,900,351	+				-0.4
1,900,351	+				-1.0
1,900,351	+				-0.3
1,900,351	+				+1.3
1,900,359	-				+0.3
1,900,359	-				+1.3
1,900,359	-				-1.0
1,900,359	-				-0.7
1,900,386	-				-0.2
1,900,400	+				-0.3
1,900,400	+				+0.2
1,900,408	-				-0.3
1,900,408	-				+0.3
1,900,449	-				+1.0
1,900,456	+				+1.3
1,900,464	-				-0.3
1,900,464	-				+1.8
1,900,464	-				-0.3
1,900,475	+				-0.1
1,900,483	-				-2.1
1,900,511	+				+0.3
1,900,511	+				-2.0
1,900,511	+				-0.5
1,900,511	+				-2.4
1,900,511	+				-1.6
1,900,511	+				+0.7
1,900,519	-				-0.7
1,900,519	-				-0.3
1,900,519	-				-1.0
1,900,519	-				-0.3
1,900,524	-				-0.1
1,900,543	+				-0.2
1,900,544	-				-2.0
1,900,553	+				-1.0
1,900,553	+				+0.7
1,900,553	+				-0.3
1,900,553	+				+0.7
1,900,553	+				+0.3
1,900,553	+				-1.9
1,900,553	+				-1.4
1,900,553	+				-0.2
1,900,553	+				-2.6
1,900,553	+				-0.3
1,900,553	+				-0.0
1,900,553	+				+0.1
1,900,553	+				+0.1
1,900,553	+				-1.3
1,900,553	+				-0.5
1,900,555	-				-0.7
1,900,561	-				-1.7
1,900,561	-				+0.3
1,900,561	-				+0.3
1,900,561	-				-1.3
1,900,561	-				+1.0
1,900,561	-				+0.3
1,900,561	-				-0.8
1,900,561	-				+0.1
1,900,561	-				-0.5
1,900,561	-				-0.1
1,900,561	-				+0.3
1,900,561	-				-1.5
1,900,561	-				-1.7
1,900,561	-				+0.1
1,900,561	-				+1.2
1,900,561	-				-0.4
1,900,561	-				-2.0
1,900,561	-				+1.9
1,900,561	-				+0.3
1,900,561	-				-0.3
1,900,561	-				+0.1
1,900,625	+				+0.3
1,900,633	-				+1.3
1,900,633	-				+1.9
1,900,667	-				+1.3
1,900,680	-				-1.0
1,900,680	-				+0.3
1,900,783	+				-0.9
1,900,783	+				+0.2
1,900,788	+				+0.3
1,900,788	+				+0.7
1,900,788	+				+0.5
1,900,788	+				-0.4
1,900,788	+				-0.1
1,900,788	+				+1.3
1,900,791	-				-1.7
1,900,791	-				+0.3
1,900,791	-				-1.0
1,900,791	-				+1.3
1,900,796	-				+0.3
1,900,796	-				-0.3
1,900,796	-				-1.0
1,900,796	-				+0.3
1,900,798	+				+0.2
1,900,798	+				+0.7
1,900,798	+				-0.9
1,900,799	+				+1.0
1,900,806	-				-0.7
1,900,807	-				-0.5
1,900,809	+				+0.5
1,900,809	+				-0.5
1,900,809	+				-1.5
1,900,817	-				+1.3
1,900,834	+				-1.0
1,900,861	+				-0.1
1,900,869	-				+0.3
1,900,869	-				+1.3
1,900,885	+				+1.7
1,900,945	+				-0.1
1,900,953	-				+0.5
1,901,010	+				+1.3
1,901,024	+				+1.3
1,901,089	+				+0.3
1,901,097	-				-0.3
1,901,097	-				-0.2
1,901,097	-				-2.2
1,901,100	+				-0.3
1,901,123	-				+0.1
1,901,133	-				+0.4
1,901,133	-				-2.0
1,901,139	+				+1.3
1,901,147	-				-0.3
1,901,147	-				-0.8
1,901,149	+				-0.8
1,901,173	-		Shewana3_1616	0.11	+1.3
1,901,177	-		Shewana3_1616	0.11	-0.3
1,901,178	-		Shewana3_1616	0.11	+1.3
1,901,178	-		Shewana3_1616	0.11	+0.7
1,901,183	+		Shewana3_1616	0.11	-1.0
1,901,183	+		Shewana3_1616	0.11	-0.7
1,901,186	-		Shewana3_1616	0.11	-0.8
1,901,191	-		Shewana3_1616	0.12	-0.7
1,901,203	-		Shewana3_1616	0.13	+2.3
1,901,205	+		Shewana3_1616	0.13	-1.2
1,901,206	-		Shewana3_1616	0.13	+0.3
1,901,206	-		Shewana3_1616	0.13	-0.3
1,901,220	-		Shewana3_1616	0.14	-2.2
1,901,220	-		Shewana3_1616	0.14	+0.3
1,901,235	+		Shewana3_1616	0.15	+1.3
1,901,238	-		Shewana3_1616	0.15	+1.3
1,901,238	-		Shewana3_1616	0.15	+0.3
1,901,238	-		Shewana3_1616	0.15	+1.3
1,901,239	-		Shewana3_1616	0.15	-2.3
1,901,243	-		Shewana3_1616	0.16	-0.3
1,901,243	-		Shewana3_1616	0.16	+1.3
1,901,245	-		Shewana3_1616	0.16	-0.5
1,901,247	+		Shewana3_1616	0.16	-0.7
1,901,292	+		Shewana3_1616	0.19	+0.3
1,901,319	-		Shewana3_1616	0.21	-0.4
1,901,327	-		Shewana3_1616	0.22	-0.7
1,901,329	-		Shewana3_1616	0.22	-1.7
1,901,346	+		Shewana3_1616	0.23	-0.3
1,901,380	+		Shewana3_1616	0.25	-1.0
1,901,463	+		Shewana3_1616	0.31	-1.3
1,901,573	+		Shewana3_1616	0.39	-0.3
1,901,581	-		Shewana3_1616	0.40	-1.0
1,901,581	-		Shewana3_1616	0.40	+1.3
1,901,581	-		Shewana3_1616	0.40	+1.3
1,901,597	-		Shewana3_1616	0.41	+1.3
1,901,597	-		Shewana3_1616	0.41	-0.3
1,901,637	-		Shewana3_1616	0.44	+0.3
1,901,718	+		Shewana3_1616	0.50	+0.3
1,901,743	-		Shewana3_1616	0.52	-0.2
1,901,745	+		Shewana3_1616	0.52	+1.3
1,901,745	+		Shewana3_1616	0.52	-0.3
1,901,745	+		Shewana3_1616	0.52	+1.3
1,901,745	+		Shewana3_1616	0.52	-2.0
1,901,745	+		Shewana3_1616	0.52	-0.2
1,901,745	+		Shewana3_1616	0.52	+0.7
1,901,745	+		Shewana3_1616	0.52	+0.3
1,901,753	-		Shewana3_1616	0.52	+1.3
1,901,753	-		Shewana3_1616	0.52	+1.7
1,901,753	-		Shewana3_1616	0.52	+0.6
1,901,753	-		Shewana3_1616	0.52	-0.7
1,901,753	-		Shewana3_1616	0.52	+0.3
1,901,753	-		Shewana3_1616	0.52	+1.3
1,901,753	-		Shewana3_1616	0.52	-0.7
1,901,753	-		Shewana3_1616	0.52	+0.3
1,901,753	-		Shewana3_1616	0.52	+0.3
1,901,753	-		Shewana3_1616	0.52	+0.3
1,901,753	-		Shewana3_1616	0.52	+1.3
1,901,753	-		Shewana3_1616	0.52	-0.1
1,901,870	+		Shewana3_1616	0.61	+1.3
1,901,870	+		Shewana3_1616	0.61	-0.7
1,901,870	+		Shewana3_1616	0.61	-1.3
1,901,870	+		Shewana3_1616	0.61	-0.3
1,901,870	+		Shewana3_1616	0.61	+1.3
1,901,870	+		Shewana3_1616	0.61	-0.3
1,901,870	+		Shewana3_1616	0.61	-1.0
1,901,870	-		Shewana3_1616	0.61	+1.3
1,901,873	-		Shewana3_1616	0.61	+1.2
1,901,876	-		Shewana3_1616	0.61	+0.3
1,901,878	-		Shewana3_1616	0.61	+1.3
1,901,878	-		Shewana3_1616	0.61	+1.3
1,901,878	-		Shewana3_1616	0.61	+0.3
1,901,878	-		Shewana3_1616	0.61	+1.3
1,901,929	+		Shewana3_1616	0.65	-1.3
1,901,945	-		Shewana3_1616	0.66	-0.0
1,901,953	+		Shewana3_1616	0.67	+1.3
1,902,000	-		Shewana3_1616	0.70	-0.7
1,902,013	-		Shewana3_1616	0.71	+0.3
1,902,036	+		Shewana3_1616	0.73	+0.7
1,902,044	-		Shewana3_1616	0.73	+0.7
1,902,057	+		Shewana3_1616	0.74	-0.3
1,902,075	+		Shewana3_1616	0.76	-0.8
1,902,080	-		Shewana3_1616	0.76	-1.0
1,902,089	+				+1.3
1,902,093	+		Shewana3_1616	0.77	-1.5
1,902,101	+		Shewana3_1616	0.77	-1.9
1,902,101	-		Shewana3_1616	0.77	+1.3
1,902,101	-		Shewana3_1616	0.77	+0.6
1,902,101	-		Shewana3_1616	0.77	+1.3
1,902,109	-		Shewana3_1616	0.78	+0.3
1,902,109	-		Shewana3_1616	0.78	+0.3
1,902,114	-		Shewana3_1616	0.78	-0.7
1,902,115	+		Shewana3_1616	0.78	-1.0
1,902,117	-		Shewana3_1616	0.79	-0.6
1,902,120	+		Shewana3_1616	0.79	+1.3
1,902,123	-		Shewana3_1616	0.79	+1.3
1,902,123	-		Shewana3_1616	0.79	+0.3
1,902,123	-		Shewana3_1616	0.79	-0.7
1,902,125	+		Shewana3_1616	0.79	-1.0
1,902,148	-		Shewana3_1616	0.81	+0.3
1,902,148	-		Shewana3_1616	0.81	+1.3
1,902,149	-		Shewana3_1616	0.81	-0.3
1,902,172	+		Shewana3_1616	0.83	-0.7
1,902,173	+		Shewana3_1616	0.83	+0.3
1,902,173	+		Shewana3_1616	0.83	-0.3
1,902,180	+		Shewana3_1616	0.83	+1.3
1,902,180	-		Shewana3_1616	0.83	-0.3
1,902,180	-		Shewana3_1616	0.83	+1.3
1,902,180	-		Shewana3_1616	0.83	+1.3
1,902,186	+		Shewana3_1616	0.84	+1.3
1,902,186	+		Shewana3_1616	0.84	-1.3
1,902,188	-		Shewana3_1616	0.84	+1.3
1,902,194	-		Shewana3_1616	0.84	-1.9
1,902,258	+		Shewana3_1616	0.89	-1.0
1,902,260	+		Shewana3_1616	0.89	-0.2
1,902,279	+				+0.6
1,902,287	+				-0.3
1,902,296	+				+0.1
1,902,296	+				+0.5
1,902,296	+				-1.0
1,902,304	-				-2.5
1,902,304	-				-0.3
1,902,355	+				+0.3
1,902,355	+				-1.9
1,902,363	-				+1.3
1,902,363	-				+1.3
1,902,363	-				-0.7
1,902,363	-				+0.3
1,902,363	-				+1.3
1,902,363	-				-1.0
1,902,363	-				-0.7
1,902,370	+				+1.3
1,902,377	+				-0.3
1,902,378	-				-1.5
1,902,379	+				-0.0
1,902,379	+				+0.3
1,902,387	-				-0.3
1,902,389	+				-0.7
1,902,413	+				-0.0
1,902,442	-				-1.5
1,902,450	-				-0.7
1,902,473	-				-1.5
1,902,551	+				-1.0
1,902,582	-				-0.3
1,902,587	+				-0.7
1,902,588	+				-1.7
1,902,595	-				-1.7
1,902,595	-				-0.7
1,902,595	-				+0.7
1,902,595	-				+0.1
1,902,595	-				+1.3
1,902,698	-		Shewana3_1617	0.18	-1.0
1,902,700	+		Shewana3_1617	0.19	-0.3
1,902,717	+		Shewana3_1617	0.21	-1.3
1,902,719	+		Shewana3_1617	0.21	+0.1
1,902,719	+		Shewana3_1617	0.21	-0.3
1,902,719	+		Shewana3_1617	0.21	-0.2
1,902,719	+		Shewana3_1617	0.21	-0.1
1,902,727	-		Shewana3_1617	0.22	-0.7
1,902,727	-		Shewana3_1617	0.22	+1.3
1,902,729	+		Shewana3_1617	0.22	+1.3
1,902,729	+		Shewana3_1617	0.22	-0.3
1,902,737	+		Shewana3_1617	0.23	+1.8
1,902,737	+		Shewana3_1617	0.23	+0.3
1,902,737	+		Shewana3_1617	0.23	-0.3
1,902,737	-		Shewana3_1617	0.23	+0.2
1,902,737	-		Shewana3_1617	0.23	-0.7
1,902,737	-		Shewana3_1617	0.23	-0.7
1,902,775	+		Shewana3_1617	0.28	+1.3
1,902,775	+		Shewana3_1617	0.28	+1.3
1,902,775	+		Shewana3_1617	0.28	-1.0
1,902,783	-		Shewana3_1617	0.28	-0.3
1,902,783	-		Shewana3_1617	0.28	-0.1
1,902,790	-		Shewana3_1617	0.29	+1.3
1,902,806	-		Shewana3_1617	0.31	+0.3
1,902,820	+		Shewana3_1617	0.33	-0.1
1,902,854	+		Shewana3_1617	0.37	+0.3
1,902,872	+		Shewana3_1617	0.39	+0.1
1,902,872	+		Shewana3_1617	0.39	+1.6
1,902,872	+		Shewana3_1617	0.39	+0.4
1,902,872	+		Shewana3_1617	0.39	-0.5
1,902,872	+		Shewana3_1617	0.39	+0.3
1,902,872	+		Shewana3_1617	0.39	-2.2
1,902,872	+		Shewana3_1617	0.39	-0.7
1,902,872	+		Shewana3_1617	0.39	+0.3
1,902,872	+		Shewana3_1617	0.39	-0.1
1,902,872	+		Shewana3_1617	0.39	+1.7
1,902,872	+		Shewana3_1617	0.39	+0.2
1,902,880	-		Shewana3_1617	0.40	-1.5
1,902,880	-		Shewana3_1617	0.40	+0.3
1,902,880	-		Shewana3_1617	0.40	+0.3
1,902,880	-		Shewana3_1617	0.40	-0.3
1,902,880	-		Shewana3_1617	0.40	+0.6
1,902,880	-		Shewana3_1617	0.40	+2.3
1,902,880	-		Shewana3_1617	0.40	+0.3
1,902,880	-		Shewana3_1617	0.40	-0.7
1,902,880	-		Shewana3_1617	0.40	-0.5
1,902,880	-		Shewana3_1617	0.40	+0.6
1,902,880	-		Shewana3_1617	0.40	+0.2
1,902,880	-		Shewana3_1617	0.40	-1.7
1,902,880	-		Shewana3_1617	0.40	-0.0
1,902,882	+		Shewana3_1617	0.40	-0.7
1,902,882	+		Shewana3_1617	0.40	-1.0
1,902,882	+		Shewana3_1617	0.40	+0.9
1,902,882	+		Shewana3_1617	0.40	-0.3
1,902,882	+		Shewana3_1617	0.40	-2.2
1,902,882	+		Shewana3_1617	0.40	-1.9
1,902,882	+		Shewana3_1617	0.40	+0.5
1,902,882	+		Shewana3_1617	0.40	+1.3
1,902,883	-		Shewana3_1617	0.40	-0.8
1,902,885	-		Shewana3_1617	0.41	-0.5
1,902,885	-		Shewana3_1617	0.41	-0.6
1,902,887	+		Shewana3_1617	0.41	-0.5
1,902,887	+		Shewana3_1617	0.41	-2.6
1,902,887	+		Shewana3_1617	0.41	+0.3
1,902,887	+		Shewana3_1617	0.41	+1.3
1,902,887	+		Shewana3_1617	0.41	-0.7
1,902,887	+		Shewana3_1617	0.41	+0.3
1,902,887	+		Shewana3_1617	0.41	-1.6
1,902,887	+		Shewana3_1617	0.41	+0.3
1,902,887	+		Shewana3_1617	0.41	+0.3
1,902,887	+		Shewana3_1617	0.41	+0.3
1,902,887	+		Shewana3_1617	0.41	-0.7
1,902,887	+		Shewana3_1617	0.41	+0.3
1,902,887	+		Shewana3_1617	0.41	-1.7
1,902,887	+		Shewana3_1617	0.41	+0.3
1,902,887	+		Shewana3_1617	0.41	+0.3
1,902,887	+		Shewana3_1617	0.41	-0.3
1,902,887	+		Shewana3_1617	0.41	+1.3
1,902,889	+		Shewana3_1617	0.41	+0.5
1,902,889	+		Shewana3_1617	0.41	-2.0
1,902,889	+		Shewana3_1617	0.41	+0.3
1,902,889	+		Shewana3_1617	0.41	-0.7
1,902,889	+		Shewana3_1617	0.41	+0.3
1,902,889	+		Shewana3_1617	0.41	-0.3
1,902,889	+		Shewana3_1617	0.41	-0.3
1,902,890	-		Shewana3_1617	0.41	-2.3
1,902,890	-		Shewana3_1617	0.41	+0.3
1,902,890	-		Shewana3_1617	0.41	-0.3
1,902,890	-		Shewana3_1617	0.41	-0.1
1,902,895	-		Shewana3_1617	0.42	+1.3
1,902,895	-		Shewana3_1617	0.42	-1.0
1,902,895	-		Shewana3_1617	0.42	+0.3
1,902,895	-		Shewana3_1617	0.42	-0.3
1,902,895	-		Shewana3_1617	0.42	+2.1
1,902,895	-		Shewana3_1617	0.42	-1.3
1,902,895	-		Shewana3_1617	0.42	+0.7
1,902,895	-		Shewana3_1617	0.42	-0.3
1,902,895	-		Shewana3_1617	0.42	+0.2
1,902,895	-		Shewana3_1617	0.42	+0.4
1,902,895	-		Shewana3_1617	0.42	-0.5
1,902,895	-		Shewana3_1617	0.42	-1.3
1,902,895	-		Shewana3_1617	0.42	+1.3
1,902,895	-		Shewana3_1617	0.42	+1.3
1,902,897	-		Shewana3_1617	0.42	-0.0
1,902,897	-		Shewana3_1617	0.42	-0.7
1,902,897	-		Shewana3_1617	0.42	-0.1
1,902,897	-		Shewana3_1617	0.42	-2.9
1,902,897	-		Shewana3_1617	0.42	-1.3
1,902,897	-		Shewana3_1617	0.42	-0.3
1,902,897	-		Shewana3_1617	0.42	-1.4
1,902,926	-		Shewana3_1617	0.45	-1.0
1,902,932	-		Shewana3_1617	0.46	-1.1
1,903,022	+		Shewana3_1617	0.57	-0.5
1,903,022	+		Shewana3_1617	0.57	+1.3
1,903,030	-		Shewana3_1617	0.58	-0.6
1,903,039	+		Shewana3_1617	0.59	-0.2
1,903,047	-		Shewana3_1617	0.60	-1.7
1,903,049	+		Shewana3_1617	0.60	+0.3
1,903,049	+		Shewana3_1617	0.60	-1.0
1,903,049	+		Shewana3_1617	0.60	-0.3
1,903,057	-		Shewana3_1617	0.61	-1.3
1,903,057	-		Shewana3_1617	0.61	-0.3
1,903,057	-		Shewana3_1617	0.61	+0.1
1,903,057	-		Shewana3_1617	0.61	+1.3
1,903,057	-		Shewana3_1617	0.61	-0.9
1,903,057	-		Shewana3_1617	0.61	-0.3
1,903,083	-		Shewana3_1617	0.64	+0.3
1,903,101	+		Shewana3_1617	0.66	-1.3
1,903,188	-		Shewana3_1617	0.77	-0.7
1,903,239	+		Shewana3_1617	0.83	-0.3
1,903,250	+		Shewana3_1617	0.84	-0.7
1,903,313	+				-0.3
1,903,321	-				-0.7
1,903,321	-				+0.3
1,903,336	+				-0.1
1,903,336	+				+0.0
1,903,336	+				-0.1
1,903,336	+				+0.1
1,903,336	+				+0.4
1,903,336	+				-0.6
1,903,336	+				-0.4
1,903,336	+				+0.7
1,903,336	+				-0.1
1,903,336	+				-0.3
1,903,341	+				+1.1
1,903,344	-				-1.0
1,903,344	-				-0.7
1,903,344	-				+0.2
1,903,354	-				+0.3
1,903,378	-				+1.3
1,903,387	+				+2.0
1,903,395	-				-0.7