Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1591

Experiment: nitrite 7.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1589 and Shewana3_1590 are separated by 34 nucleotidesShewana3_1590 and Shewana3_1591 are separated by 261 nucleotidesShewana3_1591 and Shewana3_1592 are separated by 235 nucleotides Shewana3_1589: Shewana3_1589 - GCN5-related N-acetyltransferase (RefSeq), at 1,866,683 to 1,867,147 _1589 Shewana3_1590: Shewana3_1590 - hypothetical protein (RefSeq), at 1,867,182 to 1,867,577 _1590 Shewana3_1591: Shewana3_1591 - hypothetical protein (RefSeq), at 1,867,839 to 1,868,225 _1591 Shewana3_1592: Shewana3_1592 - hypothetical protein (RefSeq), at 1,868,461 to 1,869,525 _1592 Position (kb) 1867 1868 1869Strain fitness (log2 ratio) -1 0 1at 1867.079 kb on + strand, within Shewana3_1589at 1867.079 kb on + strand, within Shewana3_1589at 1867.087 kb on - strand, within Shewana3_1589at 1867.337 kb on + strand, within Shewana3_1590at 1867.580 kb on - strandat 1867.580 kb on - strandat 1867.715 kb on + strandat 1867.723 kb on - strandat 1867.723 kb on - strandat 1867.744 kb on + strandat 1867.744 kb on + strandat 1867.788 kb on - strandat 1867.796 kb on - strandat 1868.067 kb on - strand, within Shewana3_1591at 1868.426 kb on - strandat 1868.626 kb on - strand, within Shewana3_1592at 1868.699 kb on - strand, within Shewana3_1592at 1868.833 kb on - strand, within Shewana3_1592at 1869.010 kb on + strand, within Shewana3_1592at 1869.218 kb on + strand, within Shewana3_1592

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 7.5 mM
remove
1,867,079 + Shewana3_1589 0.85 -0.0
1,867,079 + Shewana3_1589 0.85 +0.9
1,867,087 - Shewana3_1589 0.87 +0.3
1,867,337 + Shewana3_1590 0.39 +0.3
1,867,580 - +0.4
1,867,580 - +1.3
1,867,715 + +1.3
1,867,723 - +0.3
1,867,723 - -0.7
1,867,744 + -0.1
1,867,744 + -0.1
1,867,788 - +0.3
1,867,796 - -0.5
1,868,067 - Shewana3_1591 0.59 -1.1
1,868,426 - -0.5
1,868,626 - Shewana3_1592 0.15 +0.2
1,868,699 - Shewana3_1592 0.22 +0.6
1,868,833 - Shewana3_1592 0.35 +0.5
1,869,010 + Shewana3_1592 0.52 +0.6
1,869,218 + Shewana3_1592 0.71 +0.3

Or see this region's nucleotide sequence