Experiment: nitrite 7.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1589 and Shewana3_1590 are separated by 34 nucleotides Shewana3_1590 and Shewana3_1591 are separated by 261 nucleotides Shewana3_1591 and Shewana3_1592 are separated by 235 nucleotides
Shewana3_1589: Shewana3_1589 - GCN5-related N-acetyltransferase (RefSeq), at 1,866,683 to 1,867,147
_1589
Shewana3_1590: Shewana3_1590 - hypothetical protein (RefSeq), at 1,867,182 to 1,867,577
_1590
Shewana3_1591: Shewana3_1591 - hypothetical protein (RefSeq), at 1,867,839 to 1,868,225
_1591
Shewana3_1592: Shewana3_1592 - hypothetical protein (RefSeq), at 1,868,461 to 1,869,525
_1592
Position (kb)
1867
1868
1869 Strain fitness (log2 ratio)
-1
0
1 at 1867.079 kb on + strand, within Shewana3_1589 at 1867.079 kb on + strand, within Shewana3_1589 at 1867.087 kb on - strand, within Shewana3_1589 at 1867.337 kb on + strand, within Shewana3_1590 at 1867.580 kb on - strand at 1867.580 kb on - strand at 1867.715 kb on + strand at 1867.723 kb on - strand at 1867.723 kb on - strand at 1867.744 kb on + strand at 1867.744 kb on + strand at 1867.788 kb on - strand at 1867.796 kb on - strand at 1868.067 kb on - strand, within Shewana3_1591 at 1868.426 kb on - strand at 1868.626 kb on - strand, within Shewana3_1592 at 1868.699 kb on - strand, within Shewana3_1592 at 1868.833 kb on - strand, within Shewana3_1592 at 1869.010 kb on + strand, within Shewana3_1592 at 1869.218 kb on + strand, within Shewana3_1592
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 7.5 mM remove 1,867,079 + Shewana3_1589 0.85 -0.0 1,867,079 + Shewana3_1589 0.85 +0.9 1,867,087 - Shewana3_1589 0.87 +0.3 1,867,337 + Shewana3_1590 0.39 +0.3 1,867,580 - +0.4 1,867,580 - +1.3 1,867,715 + +1.3 1,867,723 - +0.3 1,867,723 - -0.7 1,867,744 + -0.1 1,867,744 + -0.1 1,867,788 - +0.3 1,867,796 - -0.5 1,868,067 - Shewana3_1591 0.59 -1.1 1,868,426 - -0.5 1,868,626 - Shewana3_1592 0.15 +0.2 1,868,699 - Shewana3_1592 0.22 +0.6 1,868,833 - Shewana3_1592 0.35 +0.5 1,869,010 + Shewana3_1592 0.52 +0.6 1,869,218 + Shewana3_1592 0.71 +0.3
Or see this region's nucleotide sequence