Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1498

Experiment: nitrite 7.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1497 and Shewana3_1498 are separated by 370 nucleotidesShewana3_1498 and Shewana3_1499 are separated by 114 nucleotides Shewana3_1497: Shewana3_1497 - aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead (RefSeq), at 1,743,628 to 1,745,874 _1497 Shewana3_1498: Shewana3_1498 - hypothetical protein (RefSeq), at 1,746,245 to 1,746,736 _1498 Shewana3_1499: Shewana3_1499 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 1,746,851 to 1,748,305 _1499 Position (kb) 1746 1747Strain fitness (log2 ratio) -1 0 1 2at 1745.318 kb on + strand, within Shewana3_1497at 1745.344 kb on + strand, within Shewana3_1497at 1745.396 kb on - strand, within Shewana3_1497at 1745.443 kb on + strand, within Shewana3_1497at 1745.499 kb on + strand, within Shewana3_1497at 1745.568 kb on + strand, within Shewana3_1497at 1745.580 kb on - strand, within Shewana3_1497at 1746.293 kb on + strandat 1746.416 kb on - strand, within Shewana3_1498at 1747.079 kb on - strand, within Shewana3_1499at 1747.110 kb on + strand, within Shewana3_1499at 1747.320 kb on + strand, within Shewana3_1499at 1747.597 kb on + strand, within Shewana3_1499at 1747.619 kb on + strand, within Shewana3_1499

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 7.5 mM
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1,745,318 + Shewana3_1497 0.75 +0.0
1,745,344 + Shewana3_1497 0.76 +0.1
1,745,396 - Shewana3_1497 0.79 -1.3
1,745,443 + Shewana3_1497 0.81 +1.1
1,745,499 + Shewana3_1497 0.83 -0.5
1,745,568 + Shewana3_1497 0.86 +0.0
1,745,580 - Shewana3_1497 0.87 +0.9
1,746,293 + +0.5
1,746,416 - Shewana3_1498 0.35 -0.8
1,747,079 - Shewana3_1499 0.16 +1.9
1,747,110 + Shewana3_1499 0.18 +0.1
1,747,320 + Shewana3_1499 0.32 -0.2
1,747,597 + Shewana3_1499 0.51 +0.8
1,747,619 + Shewana3_1499 0.53 +0.9

Or see this region's nucleotide sequence