Experiment: nitrite 7.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1480 and Shewana3_1481 overlap by 8 nucleotides Shewana3_1481 and Shewana3_1482 are separated by 110 nucleotides Shewana3_1482 and Shewana3_1483 are separated by 180 nucleotides
Shewana3_1480: Shewana3_1480 - FolC bifunctional protein (RefSeq), at 1,723,007 to 1,724,305
_1480
Shewana3_1481: Shewana3_1481 - sporulation domain-containing protein (RefSeq), at 1,724,298 to 1,725,122
_1481
Shewana3_1482: Shewana3_1482 - colicin V production protein (RefSeq), at 1,725,233 to 1,725,721
_1482
Shewana3_1483: Shewana3_1483 - amidophosphoribosyltransferase (RefSeq), at 1,725,902 to 1,727,416
_1483
Position (kb)
1725
1726 Strain fitness (log2 ratio)
-1
0
1 at 1724.555 kb on + strand, within Shewana3_1481 at 1724.716 kb on + strand, within Shewana3_1481 at 1725.210 kb on + strand at 1725.334 kb on - strand, within Shewana3_1482 at 1725.450 kb on + strand, within Shewana3_1482 at 1725.458 kb on - strand, within Shewana3_1482 at 1725.591 kb on - strand, within Shewana3_1482 at 1725.976 kb on + strand at 1725.976 kb on + strand at 1726.041 kb on - strand at 1726.051 kb on + strand at 1726.216 kb on - strand, within Shewana3_1483 at 1726.267 kb on + strand, within Shewana3_1483 at 1726.497 kb on + strand, within Shewana3_1483 at 1726.504 kb on + strand, within Shewana3_1483 at 1726.545 kb on + strand, within Shewana3_1483 at 1726.606 kb on + strand, within Shewana3_1483
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 7.5 mM remove 1,724,555 + Shewana3_1481 0.31 -1.0 1,724,716 + Shewana3_1481 0.51 +1.3 1,725,210 + +0.7 1,725,334 - Shewana3_1482 0.21 -1.3 1,725,450 + Shewana3_1482 0.44 -0.4 1,725,458 - Shewana3_1482 0.46 +0.3 1,725,591 - Shewana3_1482 0.73 -1.3 1,725,976 + +0.2 1,725,976 + -0.2 1,726,041 - -1.0 1,726,051 + +0.5 1,726,216 - Shewana3_1483 0.21 +1.3 1,726,267 + Shewana3_1483 0.24 +0.3 1,726,497 + Shewana3_1483 0.39 -1.1 1,726,504 + Shewana3_1483 0.40 -0.4 1,726,545 + Shewana3_1483 0.42 -0.3 1,726,606 + Shewana3_1483 0.46 -1.0
Or see this region's nucleotide sequence