Experiment: nitrite 7.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1173 and Shewana3_1174 overlap by 13 nucleotides Shewana3_1174 and Shewana3_1175 are separated by 84 nucleotides Shewana3_1175 and Shewana3_1176 are separated by 94 nucleotides Shewana3_1176 and Shewana3_1177 are separated by 153 nucleotides Shewana3_1177 and Shewana3_R0049 are separated by 57 nucleotides Shewana3_R0049 and Shewana3_R0050 are separated by 6 nucleotides
Shewana3_1173: Shewana3_1173 - hypothetical protein (RefSeq), at 1,383,605 to 1,384,177
_1173
Shewana3_1174: Shewana3_1174 - hypothetical protein (RefSeq), at 1,384,165 to 1,384,713
_1174
Shewana3_1175: Shewana3_1175 - hypothetical protein (RefSeq), at 1,384,798 to 1,385,019
_1175
Shewana3_1176: Shewana3_1176 - hypothetical protein (RefSeq), at 1,385,114 to 1,385,458
_1176
Shewana3_1177: Shewana3_1177 - hypothetical protein (RefSeq), at 1,385,612 to 1,385,797
_1177
Shewana3_R0049: Shewana3_R0049 - tRNA-Thr (RefSeq), at 1,385,855 to 1,385,930
_R0049
Shewana3_R0050: Shewana3_R0050 - tRNA-Phe (RefSeq), at 1,385,937 to 1,386,012
_R0050
Position (kb)
1384
1385
1386 Strain fitness (log2 ratio)
-2
-1
0
1 at 1384.207 kb on + strand at 1384.209 kb on - strand at 1384.475 kb on + strand, within Shewana3_1174 at 1384.538 kb on + strand, within Shewana3_1174 at 1384.564 kb on + strand, within Shewana3_1174 at 1384.766 kb on + strand at 1384.774 kb on - strand at 1384.774 kb on - strand at 1384.789 kb on - strand at 1384.942 kb on - strand, within Shewana3_1175 at 1385.049 kb on + strand at 1385.140 kb on - strand at 1385.464 kb on - strand at 1385.565 kb on + strand at 1385.573 kb on - strand at 1385.573 kb on - strand at 1385.723 kb on + strand, within Shewana3_1177 at 1385.769 kb on + strand, within Shewana3_1177
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 7.5 mM remove 1,384,207 + -0.6 1,384,209 - +0.7 1,384,475 + Shewana3_1174 0.56 -0.9 1,384,538 + Shewana3_1174 0.68 -0.1 1,384,564 + Shewana3_1174 0.73 -1.8 1,384,766 + +0.2 1,384,774 - +0.4 1,384,774 - -1.2 1,384,789 - -0.9 1,384,942 - Shewana3_1175 0.65 -0.9 1,385,049 + -0.2 1,385,140 - +0.5 1,385,464 - +0.4 1,385,565 + -1.1 1,385,573 - +1.1 1,385,573 - +0.5 1,385,723 + Shewana3_1177 0.60 -0.3 1,385,769 + Shewana3_1177 0.84 -1.9
Or see this region's nucleotide sequence