Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1175

Experiment: nitrite 7.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1173 and Shewana3_1174 overlap by 13 nucleotidesShewana3_1174 and Shewana3_1175 are separated by 84 nucleotidesShewana3_1175 and Shewana3_1176 are separated by 94 nucleotidesShewana3_1176 and Shewana3_1177 are separated by 153 nucleotidesShewana3_1177 and Shewana3_R0049 are separated by 57 nucleotidesShewana3_R0049 and Shewana3_R0050 are separated by 6 nucleotides Shewana3_1173: Shewana3_1173 - hypothetical protein (RefSeq), at 1,383,605 to 1,384,177 _1173 Shewana3_1174: Shewana3_1174 - hypothetical protein (RefSeq), at 1,384,165 to 1,384,713 _1174 Shewana3_1175: Shewana3_1175 - hypothetical protein (RefSeq), at 1,384,798 to 1,385,019 _1175 Shewana3_1176: Shewana3_1176 - hypothetical protein (RefSeq), at 1,385,114 to 1,385,458 _1176 Shewana3_1177: Shewana3_1177 - hypothetical protein (RefSeq), at 1,385,612 to 1,385,797 _1177 Shewana3_R0049: Shewana3_R0049 - tRNA-Thr (RefSeq), at 1,385,855 to 1,385,930 _R0049 Shewana3_R0050: Shewana3_R0050 - tRNA-Phe (RefSeq), at 1,385,937 to 1,386,012 _R0050 Position (kb) 1384 1385 1386Strain fitness (log2 ratio) -2 -1 0 1at 1384.207 kb on + strandat 1384.209 kb on - strandat 1384.475 kb on + strand, within Shewana3_1174at 1384.538 kb on + strand, within Shewana3_1174at 1384.564 kb on + strand, within Shewana3_1174at 1384.766 kb on + strandat 1384.774 kb on - strandat 1384.774 kb on - strandat 1384.789 kb on - strandat 1384.942 kb on - strand, within Shewana3_1175at 1385.049 kb on + strandat 1385.140 kb on - strandat 1385.464 kb on - strandat 1385.565 kb on + strandat 1385.573 kb on - strandat 1385.573 kb on - strandat 1385.723 kb on + strand, within Shewana3_1177at 1385.769 kb on + strand, within Shewana3_1177

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 7.5 mM
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1,384,207 + -0.6
1,384,209 - +0.7
1,384,475 + Shewana3_1174 0.56 -0.9
1,384,538 + Shewana3_1174 0.68 -0.1
1,384,564 + Shewana3_1174 0.73 -1.8
1,384,766 + +0.2
1,384,774 - +0.4
1,384,774 - -1.2
1,384,789 - -0.9
1,384,942 - Shewana3_1175 0.65 -0.9
1,385,049 + -0.2
1,385,140 - +0.5
1,385,464 - +0.4
1,385,565 + -1.1
1,385,573 - +1.1
1,385,573 - +0.5
1,385,723 + Shewana3_1177 0.60 -0.3
1,385,769 + Shewana3_1177 0.84 -1.9

Or see this region's nucleotide sequence