Experiment: nitrite 7.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0812 and Shewana3_0813 overlap by 4 nucleotides Shewana3_0813 and Shewana3_0814 are separated by 52 nucleotides Shewana3_0814 and Shewana3_0815 are separated by 30 nucleotides
Shewana3_0812: Shewana3_0812 - cysteine/glutathione ABC transporter membrane/ATP-binding component (RefSeq), at 938,660 to 940,621
_0812
Shewana3_0813: Shewana3_0813 - cysteine/glutathione ABC transporter membrane/ATP-binding component (RefSeq), at 940,618 to 942,369
_0813
Shewana3_0814: Shewana3_0814 - putative adenylyl cyclase CyaB (RefSeq), at 942,422 to 943,063
_0814
Shewana3_0815: Shewana3_0815 - IS4 family transposase (RefSeq), at 943,094 to 944,707
_0815
Position (kb) 940
941
942
943 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 939.650 kb on - strand, within Shewana3_0812 at 939.669 kb on - strand, within Shewana3_0812 at 940.034 kb on - strand, within Shewana3_0812 at 940.327 kb on - strand, within Shewana3_0812 at 940.396 kb on + strand, within Shewana3_0812 at 940.450 kb on + strand at 940.458 kb on - strand at 940.647 kb on - strand at 940.669 kb on - strand at 940.960 kb on + strand, within Shewana3_0813 at 940.978 kb on - strand, within Shewana3_0813 at 941.094 kb on + strand, within Shewana3_0813 at 941.297 kb on + strand, within Shewana3_0813 at 941.297 kb on + strand, within Shewana3_0813 at 941.305 kb on - strand, within Shewana3_0813 at 941.374 kb on - strand, within Shewana3_0813 at 941.482 kb on + strand, within Shewana3_0813 at 941.686 kb on + strand, within Shewana3_0813 at 941.871 kb on - strand, within Shewana3_0813 at 941.893 kb on - strand, within Shewana3_0813 at 942.114 kb on - strand, within Shewana3_0813 at 942.260 kb on - strand at 942.316 kb on - strand at 942.318 kb on - strand at 942.424 kb on + strand at 942.432 kb on - strand at 942.583 kb on + strand, within Shewana3_0814 at 942.617 kb on + strand, within Shewana3_0814
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 7.5 mM remove 939,650 - Shewana3_0812 0.50 -3.4 939,669 - Shewana3_0812 0.51 -1.0 940,034 - Shewana3_0812 0.70 -4.5 940,327 - Shewana3_0812 0.85 -4.2 940,396 + Shewana3_0812 0.88 -3.5 940,450 + -0.8 940,458 - -2.5 940,647 - -2.0 940,669 - -3.5 940,960 + Shewana3_0813 0.20 -5.8 940,978 - Shewana3_0813 0.21 -4.1 941,094 + Shewana3_0813 0.27 -4.8 941,297 + Shewana3_0813 0.39 -3.3 941,297 + Shewana3_0813 0.39 -3.9 941,305 - Shewana3_0813 0.39 -4.5 941,374 - Shewana3_0813 0.43 -2.3 941,482 + Shewana3_0813 0.49 -4.5 941,686 + Shewana3_0813 0.61 -5.4 941,871 - Shewana3_0813 0.72 -4.8 941,893 - Shewana3_0813 0.73 -1.0 942,114 - Shewana3_0813 0.85 -4.6 942,260 - -5.0 942,316 - -1.0 942,318 - +0.1 942,424 + +0.2 942,432 - -0.0 942,583 + Shewana3_0814 0.25 +0.6 942,617 + Shewana3_0814 0.30 -0.1
Or see this region's nucleotide sequence