Experiment: nitrite 7.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0667 and Shewana3_0668 are separated by 212 nucleotides Shewana3_0668 and Shewana3_0669 overlap by 14 nucleotides Shewana3_0669 and Shewana3_0670 overlap by 4 nucleotides
Shewana3_0667: Shewana3_0667 - magnesium transporter (RefSeq), at 788,512 to 789,876
_0667
Shewana3_0668: Shewana3_0668 - HPr family phosphocarrier protein (RefSeq), at 790,089 to 790,364
_0668
Shewana3_0669: Shewana3_0669 - hypothetical protein (RefSeq), at 790,351 to 791,205
_0669
Shewana3_0670: Shewana3_0670 - PTS IIA-like nitrogen-regulatory protein PtsN (RefSeq), at 791,202 to 791,645
_0670
Position (kb) 790
791 Strain fitness (log2 ratio) -1
0
1
2 at 789.430 kb on + strand, within Shewana3_0667 at 789.563 kb on + strand, within Shewana3_0667 at 789.600 kb on - strand, within Shewana3_0667 at 789.653 kb on + strand, within Shewana3_0667 at 789.680 kb on + strand, within Shewana3_0667 at 789.684 kb on + strand, within Shewana3_0667 at 789.864 kb on - strand at 789.956 kb on + strand at 790.066 kb on + strand at 790.180 kb on + strand, within Shewana3_0668 at 790.180 kb on - strand, within Shewana3_0668 at 790.282 kb on - strand, within Shewana3_0668 at 790.883 kb on - strand, within Shewana3_0669 at 790.885 kb on - strand, within Shewana3_0669 at 790.968 kb on + strand, within Shewana3_0669 at 791.077 kb on - strand, within Shewana3_0669 at 791.128 kb on - strand at 791.131 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 7.5 mM remove 789,430 + Shewana3_0667 0.67 -0.8 789,563 + Shewana3_0667 0.77 +0.7 789,600 - Shewana3_0667 0.80 +1.9 789,653 + Shewana3_0667 0.84 -1.2 789,680 + Shewana3_0667 0.86 -0.3 789,684 + Shewana3_0667 0.86 +0.5 789,864 - +1.2 789,956 + -0.6 790,066 + -0.1 790,180 + Shewana3_0668 0.33 -0.4 790,180 - Shewana3_0668 0.33 -1.6 790,282 - Shewana3_0668 0.70 -0.9 790,883 - Shewana3_0669 0.62 +0.1 790,885 - Shewana3_0669 0.62 +0.4 790,968 + Shewana3_0669 0.72 -0.4 791,077 - Shewana3_0669 0.85 +0.0 791,128 - -1.2 791,131 + +0.0
Or see this region's nucleotide sequence