Experiment: nitrite 7.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0657 and nrfA are separated by 224 nucleotides nrfA and Shewana3_0659 are separated by 175 nucleotides
Shewana3_0657: Shewana3_0657 - nitrate/nitrite sensor protein NarQ (RefSeq), at 776,275 to 778,071
_0657
Shewana3_0658: nrfA - cytochrome c552 (RefSeq), at 778,296 to 779,717
nrfA
Shewana3_0659: Shewana3_0659 - diguanylate cyclase/phosphodiesterase with GAF sensor (RefSeq), at 779,893 to 781,833
_0659
Position (kb) 778
779
780 Strain fitness (log2 ratio) -1
0
1 at 777.445 kb on - strand, within Shewana3_0657 at 777.450 kb on - strand, within Shewana3_0657 at 777.450 kb on - strand, within Shewana3_0657 at 777.636 kb on + strand, within Shewana3_0657 at 777.636 kb on + strand, within Shewana3_0657 at 777.702 kb on - strand, within Shewana3_0657 at 777.737 kb on + strand, within Shewana3_0657 at 777.837 kb on + strand, within Shewana3_0657 at 778.088 kb on + strand at 778.246 kb on + strand at 778.254 kb on - strand at 778.255 kb on - strand at 778.352 kb on - strand at 778.405 kb on - strand at 778.574 kb on + strand, within nrfA at 778.574 kb on + strand, within nrfA at 778.603 kb on - strand, within nrfA at 778.685 kb on - strand, within nrfA at 778.698 kb on + strand, within nrfA at 778.706 kb on - strand, within nrfA at 778.726 kb on - strand, within nrfA at 778.733 kb on + strand, within nrfA at 778.741 kb on - strand, within nrfA at 779.042 kb on + strand, within nrfA at 779.042 kb on + strand, within nrfA at 779.050 kb on - strand, within nrfA at 779.050 kb on - strand, within nrfA at 779.072 kb on - strand, within nrfA at 779.333 kb on + strand, within nrfA at 779.391 kb on - strand, within nrfA at 779.496 kb on - strand, within nrfA at 779.534 kb on + strand, within nrfA at 779.612 kb on + strand at 779.633 kb on - strand at 779.885 kb on - strand at 779.898 kb on + strand at 779.929 kb on - strand at 780.162 kb on - strand, within Shewana3_0659 at 780.166 kb on + strand, within Shewana3_0659 at 780.166 kb on + strand, within Shewana3_0659 at 780.174 kb on - strand, within Shewana3_0659 at 780.174 kb on - strand, within Shewana3_0659 at 780.330 kb on - strand, within Shewana3_0659 at 780.419 kb on - strand, within Shewana3_0659 at 780.443 kb on - strand, within Shewana3_0659 at 780.523 kb on - strand, within Shewana3_0659 at 780.558 kb on + strand, within Shewana3_0659
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 7.5 mM remove 777,445 - Shewana3_0657 0.65 +0.3 777,450 - Shewana3_0657 0.65 -1.3 777,450 - Shewana3_0657 0.65 -1.3 777,636 + Shewana3_0657 0.76 +0.9 777,636 + Shewana3_0657 0.76 -0.7 777,702 - Shewana3_0657 0.79 +0.7 777,737 + Shewana3_0657 0.81 -0.7 777,837 + Shewana3_0657 0.87 -0.4 778,088 + +0.2 778,246 + +0.8 778,254 - +0.5 778,255 - -0.3 778,352 - -0.2 778,405 - -0.3 778,574 + nrfA Shewana3_0658 0.20 +1.0 778,574 + nrfA Shewana3_0658 0.20 +1.6 778,603 - nrfA Shewana3_0658 0.22 -0.3 778,685 - nrfA Shewana3_0658 0.27 -0.1 778,698 + nrfA Shewana3_0658 0.28 +0.3 778,706 - nrfA Shewana3_0658 0.29 -0.1 778,726 - nrfA Shewana3_0658 0.30 -0.3 778,733 + nrfA Shewana3_0658 0.31 -0.2 778,741 - nrfA Shewana3_0658 0.31 -0.4 779,042 + nrfA Shewana3_0658 0.52 -1.7 779,042 + nrfA Shewana3_0658 0.52 +0.4 779,050 - nrfA Shewana3_0658 0.53 -1.6 779,050 - nrfA Shewana3_0658 0.53 -0.2 779,072 - nrfA Shewana3_0658 0.55 +0.5 779,333 + nrfA Shewana3_0658 0.73 -0.2 779,391 - nrfA Shewana3_0658 0.77 +0.6 779,496 - nrfA Shewana3_0658 0.84 -1.0 779,534 + nrfA Shewana3_0658 0.87 -0.0 779,612 + -0.3 779,633 - -0.7 779,885 - +0.1 779,898 + +0.2 779,929 - -0.3 780,162 - Shewana3_0659 0.14 -0.1 780,166 + Shewana3_0659 0.14 +0.0 780,166 + Shewana3_0659 0.14 -0.2 780,174 - Shewana3_0659 0.14 -0.2 780,174 - Shewana3_0659 0.14 +0.4 780,330 - Shewana3_0659 0.23 +0.3 780,419 - Shewana3_0659 0.27 -0.7 780,443 - Shewana3_0659 0.28 -0.1 780,523 - Shewana3_0659 0.32 +0.7 780,558 + Shewana3_0659 0.34 +0.5
Or see this region's nucleotide sequence