Experiment: nitrite 7.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0574 and Shewana3_0575 are separated by 402 nucleotides Shewana3_0575 and Shewana3_0576 are separated by 220 nucleotides
Shewana3_0574: Shewana3_0574 - ATP-dependent helicase HepA (RefSeq), at 666,930 to 669,836
_0574
Shewana3_0575: Shewana3_0575 - PhoH family protein (RefSeq), at 670,239 to 671,633
_0575
Shewana3_0576: Shewana3_0576 - multi-sensor hybrid histidine kinase (RefSeq), at 671,854 to 675,564
_0576
Position (kb) 670
671
672 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 669.257 kb on + strand, within Shewana3_0574 at 669.270 kb on + strand, within Shewana3_0574 at 669.374 kb on + strand, within Shewana3_0574 at 669.633 kb on + strand at 669.684 kb on + strand at 669.684 kb on + strand at 669.684 kb on + strand at 669.692 kb on - strand at 669.717 kb on + strand at 669.743 kb on - strand at 670.021 kb on + strand at 670.021 kb on + strand at 670.031 kb on + strand at 670.039 kb on - strand at 670.039 kb on - strand at 670.226 kb on + strand at 670.279 kb on - strand at 670.313 kb on - strand at 670.571 kb on + strand, within Shewana3_0575 at 670.636 kb on + strand, within Shewana3_0575 at 670.951 kb on + strand, within Shewana3_0575 at 671.507 kb on - strand at 671.574 kb on - strand at 671.970 kb on - strand at 672.073 kb on + strand at 672.108 kb on + strand at 672.229 kb on + strand, within Shewana3_0576 at 672.273 kb on + strand, within Shewana3_0576 at 672.312 kb on + strand, within Shewana3_0576 at 672.312 kb on + strand, within Shewana3_0576 at 672.399 kb on + strand, within Shewana3_0576 at 672.501 kb on + strand, within Shewana3_0576 at 672.520 kb on + strand, within Shewana3_0576 at 672.539 kb on + strand, within Shewana3_0576 at 672.539 kb on + strand, within Shewana3_0576
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 7.5 mM remove 669,257 + Shewana3_0574 0.80 -0.7 669,270 + Shewana3_0574 0.80 +0.1 669,374 + Shewana3_0574 0.84 -1.6 669,633 + -0.3 669,684 + -0.8 669,684 + +0.1 669,684 + -1.8 669,692 - -0.4 669,717 + -0.3 669,743 - -0.2 670,021 + -0.0 670,021 + +0.1 670,031 + +0.4 670,039 - +0.2 670,039 - +0.5 670,226 + -0.1 670,279 - -0.1 670,313 - +0.5 670,571 + Shewana3_0575 0.24 -2.8 670,636 + Shewana3_0575 0.28 +0.0 670,951 + Shewana3_0575 0.51 +0.0 671,507 - +0.2 671,574 - -0.3 671,970 - -0.6 672,073 + -1.6 672,108 + -2.1 672,229 + Shewana3_0576 0.10 -0.3 672,273 + Shewana3_0576 0.11 -2.1 672,312 + Shewana3_0576 0.12 -0.3 672,312 + Shewana3_0576 0.12 -1.8 672,399 + Shewana3_0576 0.15 -1.7 672,501 + Shewana3_0576 0.17 -2.9 672,520 + Shewana3_0576 0.18 -2.1 672,539 + Shewana3_0576 0.18 -1.3 672,539 + Shewana3_0576 0.18 -3.4
Or see this region's nucleotide sequence