Experiment: nitrite 7.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4252 and Shewana3_4253 are separated by 2 nucleotides Shewana3_4253 and Shewana3_4254 overlap by 14 nucleotides
Shewana3_4252: Shewana3_4252 - phage integrase family protein (RefSeq), at 127,520 to 129,604
_4252
Shewana3_4253: Shewana3_4253 - hypothetical protein (RefSeq), at 129,607 to 131,877
_4253
Shewana3_4254: Shewana3_4254 - phage integrase family protein (RefSeq), at 131,864 to 133,129
_4254
Position (kb) 129
130
131
132 Strain fitness (log2 ratio) -1
0
1 at 128.862 kb on + strand, within Shewana3_4252 at 128.885 kb on + strand, within Shewana3_4252 at 128.908 kb on + strand, within Shewana3_4252 at 128.938 kb on - strand, within Shewana3_4252 at 129.025 kb on + strand, within Shewana3_4252 at 129.063 kb on - strand, within Shewana3_4252 at 129.199 kb on - strand, within Shewana3_4252 at 129.257 kb on - strand, within Shewana3_4252 at 129.366 kb on - strand, within Shewana3_4252 at 129.368 kb on - strand, within Shewana3_4252 at 129.510 kb on - strand at 129.529 kb on + strand at 129.529 kb on + strand at 129.537 kb on - strand at 129.537 kb on - strand at 129.636 kb on + strand at 129.654 kb on + strand at 129.679 kb on + strand at 130.037 kb on + strand, within Shewana3_4253 at 130.109 kb on + strand, within Shewana3_4253 at 130.139 kb on + strand, within Shewana3_4253 at 130.312 kb on + strand, within Shewana3_4253 at 130.315 kb on - strand, within Shewana3_4253 at 130.412 kb on + strand, within Shewana3_4253 at 130.580 kb on + strand, within Shewana3_4253 at 130.588 kb on - strand, within Shewana3_4253 at 130.617 kb on - strand, within Shewana3_4253 at 130.754 kb on - strand, within Shewana3_4253 at 130.780 kb on - strand, within Shewana3_4253 at 130.791 kb on + strand, within Shewana3_4253 at 130.861 kb on - strand, within Shewana3_4253 at 130.953 kb on - strand, within Shewana3_4253 at 131.049 kb on - strand, within Shewana3_4253 at 131.051 kb on + strand, within Shewana3_4253 at 131.114 kb on - strand, within Shewana3_4253 at 131.131 kb on + strand, within Shewana3_4253 at 131.206 kb on - strand, within Shewana3_4253 at 131.361 kb on - strand, within Shewana3_4253 at 131.419 kb on - strand, within Shewana3_4253 at 131.457 kb on + strand, within Shewana3_4253 at 131.476 kb on - strand, within Shewana3_4253 at 131.761 kb on - strand at 131.780 kb on - strand at 131.827 kb on + strand at 131.915 kb on - strand at 131.944 kb on + strand at 131.982 kb on - strand at 132.015 kb on - strand, within Shewana3_4254 at 132.042 kb on + strand, within Shewana3_4254 at 132.060 kb on + strand, within Shewana3_4254 at 132.060 kb on + strand, within Shewana3_4254 at 132.066 kb on - strand, within Shewana3_4254 at 132.246 kb on + strand, within Shewana3_4254 at 132.404 kb on + strand, within Shewana3_4254 at 132.587 kb on + strand, within Shewana3_4254 at 132.597 kb on - strand, within Shewana3_4254 at 132.660 kb on + strand, within Shewana3_4254 at 132.714 kb on + strand, within Shewana3_4254 at 132.714 kb on + strand, within Shewana3_4254 at 132.745 kb on - strand, within Shewana3_4254 at 132.745 kb on - strand, within Shewana3_4254 at 132.780 kb on - strand, within Shewana3_4254
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 7.5 mM remove 128,862 + Shewana3_4252 0.64 -0.4 128,885 + Shewana3_4252 0.65 +0.4 128,908 + Shewana3_4252 0.67 -0.1 128,938 - Shewana3_4252 0.68 -0.3 129,025 + Shewana3_4252 0.72 +0.4 129,063 - Shewana3_4252 0.74 -1.3 129,199 - Shewana3_4252 0.81 -0.4 129,257 - Shewana3_4252 0.83 -0.3 129,366 - Shewana3_4252 0.89 +0.0 129,368 - Shewana3_4252 0.89 -0.4 129,510 - +0.0 129,529 + -0.3 129,529 + -0.2 129,537 - +0.3 129,537 - +0.6 129,636 + -0.8 129,654 + -1.1 129,679 + +0.9 130,037 + Shewana3_4253 0.19 -0.0 130,109 + Shewana3_4253 0.22 +0.2 130,139 + Shewana3_4253 0.23 +0.5 130,312 + Shewana3_4253 0.31 -1.0 130,315 - Shewana3_4253 0.31 -0.2 130,412 + Shewana3_4253 0.35 -0.9 130,580 + Shewana3_4253 0.43 -0.4 130,588 - Shewana3_4253 0.43 +0.5 130,617 - Shewana3_4253 0.44 +0.0 130,754 - Shewana3_4253 0.51 +0.3 130,780 - Shewana3_4253 0.52 -0.3 130,791 + Shewana3_4253 0.52 -0.4 130,861 - Shewana3_4253 0.55 -0.2 130,953 - Shewana3_4253 0.59 +0.3 131,049 - Shewana3_4253 0.63 -0.1 131,051 + Shewana3_4253 0.64 -0.5 131,114 - Shewana3_4253 0.66 -1.3 131,131 + Shewana3_4253 0.67 -1.6 131,206 - Shewana3_4253 0.70 -0.4 131,361 - Shewana3_4253 0.77 +0.0 131,419 - Shewana3_4253 0.80 -0.2 131,457 + Shewana3_4253 0.81 +0.0 131,476 - Shewana3_4253 0.82 +0.3 131,761 - +0.6 131,780 - -0.3 131,827 + -0.3 131,915 - +0.9 131,944 + -1.0 131,982 - -0.1 132,015 - Shewana3_4254 0.12 +0.5 132,042 + Shewana3_4254 0.14 -0.9 132,060 + Shewana3_4254 0.15 +0.3 132,060 + Shewana3_4254 0.15 -1.3 132,066 - Shewana3_4254 0.16 +0.2 132,246 + Shewana3_4254 0.30 -0.4 132,404 + Shewana3_4254 0.43 +0.0 132,587 + Shewana3_4254 0.57 +0.2 132,597 - Shewana3_4254 0.58 +0.2 132,660 + Shewana3_4254 0.63 +0.7 132,714 + Shewana3_4254 0.67 +0.9 132,714 + Shewana3_4254 0.67 +0.9 132,745 - Shewana3_4254 0.70 +0.3 132,745 - Shewana3_4254 0.70 -0.0 132,780 - Shewana3_4254 0.72 -1.5
Or see this region's nucleotide sequence