Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3736 and Shew_3737 are separated by 7 nucleotides Shew_3737 and Shew_3738 overlap by 4 nucleotides Shew_3738 and trkA are separated by 9 nucleotides
Shew_3736: Shew_3736 - peptide deformylase (RefSeq), at 4,449,631 to 4,450,143
_3736
Shew_3737: Shew_3737 - methionyl-tRNA formyltransferase (RefSeq), at 4,450,151 to 4,451,125
_3737
Shew_3738: Shew_3738 - sun protein (RefSeq), at 4,451,122 to 4,452,405
_3738
Shew_3739: trkA - potassium transporter peripheral membrane component (RefSeq), at 4,452,415 to 4,453,824
trkA
Position (kb)
4451
4452
4453 Strain fitness (log2 ratio)
-1
0
1 at 4451.187 kb on + strand at 4451.457 kb on + strand, within Shew_3738 at 4451.465 kb on - strand, within Shew_3738 at 4451.466 kb on + strand, within Shew_3738 at 4451.466 kb on + strand, within Shew_3738 at 4451.472 kb on - strand, within Shew_3738 at 4451.565 kb on + strand, within Shew_3738 at 4451.588 kb on + strand, within Shew_3738 at 4451.734 kb on + strand, within Shew_3738 at 4451.794 kb on + strand, within Shew_3738 at 4451.794 kb on + strand, within Shew_3738 at 4451.802 kb on - strand, within Shew_3738
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 4,451,187 + -1.3 4,451,457 + Shew_3738 0.26 -0.4 4,451,465 - Shew_3738 0.27 -1.6 4,451,466 + Shew_3738 0.27 -0.6 4,451,466 + Shew_3738 0.27 -0.6 4,451,472 - Shew_3738 0.27 -1.6 4,451,565 + Shew_3738 0.35 -0.8 4,451,588 + Shew_3738 0.36 -1.5 4,451,734 + Shew_3738 0.48 -0.7 4,451,794 + Shew_3738 0.52 -0.7 4,451,794 + Shew_3738 0.52 -0.9 4,451,802 - Shew_3738 0.53 -1.5
Or see this region's nucleotide sequence