Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2431 and Shew_2432 overlap by 7 nucleotides Shew_2432 and Shew_2433 are separated by 84 nucleotides Shew_2433 and Shew_2434 overlap by 8 nucleotides
Shew_2431: Shew_2431 - TPR repeat-containing protein (RefSeq), at 2,856,557 to 2,858,638
_2431
Shew_2432: Shew_2432 - hypothetical protein (RefSeq), at 2,858,632 to 2,860,272
_2432
Shew_2433: Shew_2433 - RNA polymerase sigma factor (RefSeq), at 2,860,357 to 2,860,920
_2433
Shew_2434: Shew_2434 - hypothetical protein (RefSeq), at 2,860,913 to 2,861,617
_2434
Position (kb)
2858
2859
2860
2861 Strain fitness (log2 ratio)
-2
-1
0
1 at 2857.826 kb on - strand, within Shew_2431 at 2857.958 kb on + strand, within Shew_2431 at 2859.083 kb on - strand, within Shew_2432 at 2859.233 kb on + strand, within Shew_2432 at 2859.233 kb on + strand, within Shew_2432 at 2859.350 kb on + strand, within Shew_2432 at 2859.360 kb on + strand, within Shew_2432 at 2859.368 kb on - strand, within Shew_2432 at 2859.688 kb on - strand, within Shew_2432 at 2859.876 kb on - strand, within Shew_2432 at 2860.113 kb on - strand at 2860.120 kb on - strand at 2861.144 kb on + strand, within Shew_2434
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 2,857,826 - Shew_2431 0.61 -0.7 2,857,958 + Shew_2431 0.67 +0.4 2,859,083 - Shew_2432 0.27 -0.2 2,859,233 + Shew_2432 0.37 +0.3 2,859,233 + Shew_2432 0.37 -1.7 2,859,350 + Shew_2432 0.44 -1.2 2,859,360 + Shew_2432 0.44 -1.4 2,859,368 - Shew_2432 0.45 +0.1 2,859,688 - Shew_2432 0.64 -0.7 2,859,876 - Shew_2432 0.76 -2.1 2,860,113 - -0.8 2,860,120 - -0.6 2,861,144 + Shew_2434 0.33 -0.6
Or see this region's nucleotide sequence