Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1524 and Shew_1525 overlap by 1 nucleotides Shew_1525 and Shew_1526 are separated by 3 nucleotides Shew_1526 and Shew_1527 are separated by 9 nucleotides
Shew_1524: Shew_1524 - MotA/TolQ/ExbB proton channel (RefSeq), at 1,748,009 to 1,748,698
_1524
Shew_1525: Shew_1525 - biopolymer transport protein ExbD/TolR (RefSeq), at 1,748,698 to 1,749,132
_1525
Shew_1526: Shew_1526 - TolA family protein (RefSeq), at 1,749,136 to 1,750,071
_1526
Shew_1527: Shew_1527 - TolB domain-containing protein (RefSeq), at 1,750,081 to 1,751,406
_1527
Position (kb) 1749
1750
1751 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1748.296 kb on + strand, within Shew_1524 at 1748.437 kb on + strand, within Shew_1524 at 1748.437 kb on + strand, within Shew_1524 at 1748.950 kb on + strand, within Shew_1525 at 1749.245 kb on - strand, within Shew_1526 at 1749.551 kb on - strand, within Shew_1526 at 1749.810 kb on - strand, within Shew_1526 at 1749.815 kb on - strand, within Shew_1526
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 1,748,296 + Shew_1524 0.42 -3.4 1,748,437 + Shew_1524 0.62 -4.1 1,748,437 + Shew_1524 0.62 -4.0 1,748,950 + Shew_1525 0.58 +1.6 1,749,245 - Shew_1526 0.12 -0.7 1,749,551 - Shew_1526 0.44 -3.9 1,749,810 - Shew_1526 0.72 -1.7 1,749,815 - Shew_1526 0.73 -3.1
Or see this region's nucleotide sequence