Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1437 and Shew_1438 are separated by 246 nucleotides Shew_1438 and Shew_1439 are separated by 93 nucleotides Shew_1439 and Shew_1440 are separated by 29 nucleotides
Shew_1437: Shew_1437 - transcriptional regulator, TyrR (RefSeq), at 1,651,424 to 1,652,968
_1437
Shew_1438: Shew_1438 - fumarylacetoacetate (FAA) hydrolase (RefSeq), at 1,653,215 to 1,654,201
_1438
Shew_1439: Shew_1439 - maleylacetoacetate isomerase (RefSeq), at 1,654,295 to 1,654,939
_1439
Shew_1440: Shew_1440 - LysR family transcriptional regulator (RefSeq), at 1,654,969 to 1,655,859
_1440
Position (kb)
1653
1654
1655 Strain fitness (log2 ratio)
-1
0
1 at 1652.700 kb on + strand, within Shew_1437 at 1652.708 kb on + strand, within Shew_1437 at 1652.853 kb on - strand at 1653.127 kb on + strand at 1653.182 kb on - strand at 1653.182 kb on - strand at 1653.280 kb on + strand at 1653.736 kb on + strand, within Shew_1438 at 1654.177 kb on + strand at 1654.629 kb on + strand, within Shew_1439 at 1654.659 kb on + strand, within Shew_1439 at 1654.667 kb on - strand, within Shew_1439 at 1654.784 kb on - strand, within Shew_1439 at 1655.074 kb on - strand, within Shew_1440
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 1,652,700 + Shew_1437 0.83 +0.3 1,652,708 + Shew_1437 0.83 +1.1 1,652,853 - +1.6 1,653,127 + -0.0 1,653,182 - +1.0 1,653,182 - -0.0 1,653,280 + -1.3 1,653,736 + Shew_1438 0.53 -1.4 1,654,177 + +0.8 1,654,629 + Shew_1439 0.52 +0.7 1,654,659 + Shew_1439 0.56 +0.7 1,654,667 - Shew_1439 0.58 +0.5 1,654,784 - Shew_1439 0.76 -0.2 1,655,074 - Shew_1440 0.12 +0.7
Or see this region's nucleotide sequence