Strain Fitness in Shewanella loihica PV-4 around Shew_1095

Experiment: Chlorite 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1094 and Shew_1095 are separated by 135 nucleotidesShew_1095 and rpsT are separated by 221 nucleotidesrpsT and Shew_1097 are separated by 247 nucleotides Shew_1094: Shew_1094 - peptidase M28 (RefSeq), at 1,261,904 to 1,263,310 _1094 Shew_1095: Shew_1095 - ArsR family transcriptional regulator (RefSeq), at 1,263,446 to 1,263,742 _1095 Shew_1096: rpsT - 30S ribosomal protein S20 (RefSeq), at 1,263,964 to 1,264,230 rpsT Shew_1097: Shew_1097 - integral membrane protein MviN (RefSeq), at 1,264,478 to 1,266,037 _1097 Position (kb) 1263 1264Strain fitness (log2 ratio) -3 -2 -1 0 1at 1262.705 kb on + strand, within Shew_1094at 1262.713 kb on - strand, within Shew_1094at 1262.747 kb on + strand, within Shew_1094at 1263.011 kb on - strand, within Shew_1094at 1263.094 kb on + strand, within Shew_1094at 1263.150 kb on - strand, within Shew_1094at 1263.199 kb on + strandat 1263.450 kb on + strandat 1263.499 kb on + strand, within Shew_1095at 1263.621 kb on - strand, within Shew_1095at 1264.355 kb on - strandat 1264.355 kb on - strandat 1264.355 kb on - strandat 1264.371 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 200 mM
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1,262,705 + Shew_1094 0.57 +0.3
1,262,713 - Shew_1094 0.57 +0.6
1,262,747 + Shew_1094 0.60 -0.0
1,263,011 - Shew_1094 0.79 +0.2
1,263,094 + Shew_1094 0.85 -1.0
1,263,150 - Shew_1094 0.89 +0.9
1,263,199 + +0.7
1,263,450 + -0.5
1,263,499 + Shew_1095 0.18 -0.7
1,263,621 - Shew_1095 0.59 +0.0
1,264,355 - -1.9
1,264,355 - -3.7
1,264,355 - -2.1
1,264,371 + -0.0

Or see this region's nucleotide sequence