Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0684 and Shew_0685 are separated by 66 nucleotides Shew_0685 and Shew_0686 are separated by 88 nucleotides Shew_0686 and Shew_0687 are separated by 184 nucleotides
Shew_0684: Shew_0684 - hypothetical protein (RefSeq), at 778,885 to 779,292
_0684
Shew_0685: Shew_0685 - hypothetical protein (RefSeq), at 779,359 to 780,066
_0685
Shew_0686: Shew_0686 - DSBA oxidoreductase (RefSeq), at 780,155 to 780,817
_0686
Shew_0687: Shew_0687 - heat shock protein DnaJ domain-containing protein (RefSeq), at 781,002 to 781,661
_0687
Position (kb) 780
781 Strain fitness (log2 ratio) -2
-1
0
1 at 779.238 kb on + strand, within Shew_0684 at 779.286 kb on + strand at 779.286 kb on + strand at 779.286 kb on + strand at 779.294 kb on - strand at 779.404 kb on + strand at 779.414 kb on + strand at 779.507 kb on - strand, within Shew_0685 at 779.521 kb on - strand, within Shew_0685 at 779.647 kb on - strand, within Shew_0685 at 779.885 kb on - strand, within Shew_0685 at 780.547 kb on + strand, within Shew_0686 at 780.683 kb on - strand, within Shew_0686 at 780.691 kb on + strand, within Shew_0686 at 780.864 kb on - strand at 781.023 kb on + strand at 781.031 kb on - strand at 781.154 kb on + strand, within Shew_0687 at 781.258 kb on + strand, within Shew_0687 at 781.358 kb on + strand, within Shew_0687 at 781.492 kb on - strand, within Shew_0687 at 781.742 kb on - strand at 781.777 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 779,238 + Shew_0684 0.87 +0.0 779,286 + -0.5 779,286 + -1.9 779,286 + +0.7 779,294 - +0.3 779,404 + +0.4 779,414 + -0.0 779,507 - Shew_0685 0.21 +0.1 779,521 - Shew_0685 0.23 -0.9 779,647 - Shew_0685 0.41 +0.4 779,885 - Shew_0685 0.74 +0.9 780,547 + Shew_0686 0.59 -1.7 780,683 - Shew_0686 0.80 -1.9 780,691 + Shew_0686 0.81 -0.1 780,864 - +0.1 781,023 + +0.4 781,031 - +0.1 781,154 + Shew_0687 0.23 +0.1 781,258 + Shew_0687 0.39 -0.1 781,358 + Shew_0687 0.54 -0.1 781,492 - Shew_0687 0.74 -0.3 781,742 - -1.7 781,777 + +1.2
Or see this region's nucleotide sequence