Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0613 and Shew_0614 overlap by 1 nucleotides Shew_0614 and Shew_0615 are separated by 154 nucleotides
Shew_0613: Shew_0613 - cysteine/glutathione ABC transporter membrane/ATP-binding component (RefSeq), at 693,986 to 695,749
_0613
Shew_0614: Shew_0614 - cysteine/glutathione ABC transporter membrane/ATP-binding component (RefSeq), at 695,749 to 697,524
_0614
Shew_0615: Shew_0615 - bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase (RefSeq), at 697,679 to 700,858
_0615
Position (kb) 695
696
697
698 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 694.836 kb on + strand, within Shew_0613 at 694.927 kb on + strand, within Shew_0613 at 695.078 kb on + strand, within Shew_0613 at 695.222 kb on + strand, within Shew_0613 at 695.232 kb on + strand, within Shew_0613 at 695.487 kb on - strand, within Shew_0613 at 695.778 kb on + strand at 695.848 kb on + strand at 696.052 kb on - strand, within Shew_0614 at 696.774 kb on - strand, within Shew_0614 at 697.106 kb on - strand, within Shew_0614 at 697.141 kb on + strand, within Shew_0614 at 697.151 kb on - strand, within Shew_0614 at 697.229 kb on - strand, within Shew_0614 at 697.365 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 694,836 + Shew_0613 0.48 -1.8 694,927 + Shew_0613 0.53 -3.6 695,078 + Shew_0613 0.62 -4.7 695,222 + Shew_0613 0.70 -0.6 695,232 + Shew_0613 0.71 -6.3 695,487 - Shew_0613 0.85 -3.1 695,778 + -5.6 695,848 + -2.8 696,052 - Shew_0614 0.17 -2.3 696,774 - Shew_0614 0.58 -3.6 697,106 - Shew_0614 0.76 -5.4 697,141 + Shew_0614 0.78 -3.1 697,151 - Shew_0614 0.79 -1.3 697,229 - Shew_0614 0.83 -5.2 697,365 + -7.2
Or see this region's nucleotide sequence