Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0565 and Shew_0566 are separated by 92 nucleotides Shew_0566 and Shew_0567 are separated by 20 nucleotides Shew_0567 and Shew_0568 are separated by 43 nucleotides
Shew_0565: Shew_0565 - tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq), at 641,153 to 642,079
_0565
Shew_0566: Shew_0566 - RNA chaperone Hfq (RefSeq), at 642,172 to 642,450
_0566
Shew_0567: Shew_0567 - GTP-binding protein, HSR1-related (RefSeq), at 642,471 to 643,769
_0567
Shew_0568: Shew_0568 - HflK protein (RefSeq), at 643,813 to 644,955
_0568
Position (kb) 642
643
644 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 641.590 kb on + strand, within Shew_0565 at 641.717 kb on + strand, within Shew_0565 at 641.768 kb on + strand, within Shew_0565 at 641.768 kb on + strand, within Shew_0565 at 641.987 kb on + strand at 642.371 kb on + strand, within Shew_0566 at 642.499 kb on + strand at 642.504 kb on + strand at 642.538 kb on + strand at 642.839 kb on + strand, within Shew_0567 at 643.324 kb on + strand, within Shew_0567 at 643.798 kb on + strand at 643.981 kb on + strand, within Shew_0568 at 644.378 kb on + strand, within Shew_0568 at 644.606 kb on + strand, within Shew_0568 at 644.606 kb on + strand, within Shew_0568
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 641,590 + Shew_0565 0.47 -1.2 641,717 + Shew_0565 0.61 -3.0 641,768 + Shew_0565 0.66 -1.8 641,768 + Shew_0565 0.66 -2.5 641,987 + -1.2 642,371 + Shew_0566 0.71 -4.1 642,499 + -1.4 642,504 + -1.0 642,538 + -0.9 642,839 + Shew_0567 0.28 -2.0 643,324 + Shew_0567 0.66 -0.7 643,798 + -0.5 643,981 + Shew_0568 0.15 -1.7 644,378 + Shew_0568 0.49 -2.0 644,606 + Shew_0568 0.69 -0.4 644,606 + Shew_0568 0.69 -1.5
Or see this region's nucleotide sequence