Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_826 and Pf1N1B4_827 are separated by 129 nucleotides Pf1N1B4_827 and Pf1N1B4_828 overlap by 1 nucleotides Pf1N1B4_828 and Pf1N1B4_829 are separated by 475 nucleotides
Pf1N1B4_826 - tRNA (5-methoxyuridine) 34 synthase, at 947,409 to 948,365
_826
Pf1N1B4_827 - tRNA-specific adenosine-34 deaminase (EC 3.5.4.-), at 948,495 to 948,992
_827
Pf1N1B4_828 - Multicopper oxidase, at 948,992 to 950,368
_828
Pf1N1B4_829 - Mobile element protein, at 950,844 to 951,680
_829
Position (kb) 948
949
950
951 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 947.995 kb on - strand, within Pf1N1B4_826 at 948.267 kb on + strand at 948.267 kb on + strand, within Pf1N1B4_826 at 948.267 kb on + strand, within Pf1N1B4_826 at 948.267 kb on + strand, within Pf1N1B4_826 at 948.267 kb on + strand, within Pf1N1B4_826 at 948.268 kb on - strand, within Pf1N1B4_826 at 948.363 kb on + strand at 948.363 kb on + strand at 948.363 kb on + strand at 948.388 kb on + strand at 948.388 kb on + strand at 948.389 kb on - strand at 948.497 kb on - strand at 948.497 kb on - strand at 949.120 kb on - strand at 949.120 kb on - strand at 949.120 kb on - strand at 949.120 kb on - strand at 949.135 kb on - strand, within Pf1N1B4_828 at 949.135 kb on - strand, within Pf1N1B4_828 at 949.237 kb on - strand, within Pf1N1B4_828 at 949.237 kb on - strand, within Pf1N1B4_828 at 949.561 kb on + strand, within Pf1N1B4_828 at 949.561 kb on + strand, within Pf1N1B4_828 at 949.561 kb on + strand, within Pf1N1B4_828 at 949.561 kb on + strand, within Pf1N1B4_828 at 949.562 kb on - strand at 949.562 kb on - strand, within Pf1N1B4_828 at 949.632 kb on + strand at 949.632 kb on + strand, within Pf1N1B4_828 at 949.632 kb on + strand, within Pf1N1B4_828 at 949.632 kb on + strand, within Pf1N1B4_828 at 949.632 kb on + strand, within Pf1N1B4_828 at 949.633 kb on - strand, within Pf1N1B4_828 at 949.633 kb on - strand, within Pf1N1B4_828 at 949.633 kb on - strand, within Pf1N1B4_828 at 949.633 kb on - strand, within Pf1N1B4_828 at 949.668 kb on + strand, within Pf1N1B4_828 at 949.965 kb on + strand, within Pf1N1B4_828 at 949.966 kb on - strand, within Pf1N1B4_828 at 949.966 kb on - strand, within Pf1N1B4_828 at 949.993 kb on + strand, within Pf1N1B4_828 at 949.993 kb on + strand, within Pf1N1B4_828 at 949.994 kb on - strand at 949.995 kb on + strand, within Pf1N1B4_828 at 949.995 kb on + strand, within Pf1N1B4_828 at 949.996 kb on - strand, within Pf1N1B4_828 at 950.037 kb on + strand, within Pf1N1B4_828 at 950.037 kb on + strand, within Pf1N1B4_828 at 950.038 kb on - strand, within Pf1N1B4_828 at 950.038 kb on - strand, within Pf1N1B4_828 at 950.244 kb on + strand at 950.245 kb on - strand at 950.245 kb on - strand at 950.245 kb on - strand at 950.245 kb on - strand at 950.345 kb on + strand at 950.346 kb on - strand at 950.346 kb on - strand at 950.346 kb on - strand at 950.378 kb on + strand at 950.378 kb on + strand at 950.378 kb on + strand at 950.378 kb on + strand at 950.378 kb on + strand at 950.378 kb on + strand at 950.378 kb on + strand at 950.378 kb on + strand at 950.378 kb on + strand at 950.378 kb on + strand at 950.379 kb on - strand at 950.379 kb on - strand at 950.379 kb on - strand at 950.379 kb on - strand at 950.379 kb on - strand at 950.379 kb on - strand at 950.379 kb on - strand at 950.387 kb on + strand at 950.387 kb on + strand at 950.387 kb on + strand at 950.387 kb on + strand at 950.388 kb on - strand at 950.388 kb on - strand at 950.490 kb on + strand at 950.491 kb on - strand at 950.517 kb on + strand at 950.517 kb on + strand at 950.517 kb on + strand at 950.517 kb on + strand at 950.517 kb on + strand at 950.518 kb on - strand at 950.518 kb on - strand at 950.518 kb on - strand at 950.533 kb on - strand at 950.542 kb on - strand at 950.542 kb on - strand at 950.542 kb on - strand at 950.612 kb on - strand at 950.636 kb on + strand at 950.636 kb on + strand at 950.664 kb on - strand at 950.664 kb on - strand at 950.743 kb on - strand at 950.753 kb on - strand at 950.768 kb on - strand at 950.775 kb on - strand at 950.775 kb on - strand at 950.820 kb on + strand at 950.820 kb on + strand at 950.821 kb on - strand at 950.821 kb on - strand at 950.821 kb on - strand at 950.838 kb on - strand at 950.865 kb on - strand at 950.890 kb on + strand at 950.890 kb on + strand at 950.890 kb on + strand at 950.891 kb on - strand at 950.891 kb on - strand at 950.891 kb on - strand at 950.891 kb on - strand at 950.891 kb on - strand at 950.894 kb on + strand at 950.894 kb on + strand at 950.894 kb on + strand at 950.894 kb on + strand at 950.895 kb on - strand at 950.895 kb on - strand at 950.895 kb on - strand at 950.895 kb on - strand at 950.895 kb on - strand at 950.915 kb on - strand at 950.927 kb on - strand at 950.927 kb on - strand at 950.927 kb on - strand at 950.927 kb on - strand at 951.106 kb on + strand, within Pf1N1B4_829 at 951.107 kb on - strand, within Pf1N1B4_829 at 951.265 kb on + strand, within Pf1N1B4_829 at 951.265 kb on + strand, within Pf1N1B4_829 at 951.266 kb on - strand, within Pf1N1B4_829 at 951.266 kb on - strand, within Pf1N1B4_829 at 951.266 kb on - strand, within Pf1N1B4_829 at 951.292 kb on + strand, within Pf1N1B4_829 at 951.292 kb on + strand, within Pf1N1B4_829 at 951.292 kb on + strand, within Pf1N1B4_829 at 951.292 kb on + strand at 951.293 kb on - strand, within Pf1N1B4_829 at 951.293 kb on - strand, within Pf1N1B4_829 at 951.293 kb on - strand, within Pf1N1B4_829 at 951.293 kb on - strand, within Pf1N1B4_829 at 951.293 kb on - strand, within Pf1N1B4_829 at 951.293 kb on - strand, within Pf1N1B4_829 at 951.293 kb on - strand, within Pf1N1B4_829
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 947,995 - Pf1N1B4_826 0.61 -1.0 948,267 + +1.0 948,267 + Pf1N1B4_826 0.90 +0.4 948,267 + Pf1N1B4_826 0.90 +2.6 948,267 + Pf1N1B4_826 0.90 -0.1 948,267 + Pf1N1B4_826 0.90 +0.0 948,268 - Pf1N1B4_826 0.90 +0.0 948,363 + -2.0 948,363 + +1.6 948,363 + -0.5 948,388 + +1.0 948,388 + -2.3 948,389 - +2.9 948,497 - -1.0 948,497 - +1.4 949,120 - -1.7 949,120 - +0.2 949,120 - -0.0 949,120 - -1.0 949,135 - Pf1N1B4_828 0.10 +0.0 949,135 - Pf1N1B4_828 0.10 +0.6 949,237 - Pf1N1B4_828 0.18 +0.2 949,237 - Pf1N1B4_828 0.18 -0.5 949,561 + Pf1N1B4_828 0.41 -1.0 949,561 + Pf1N1B4_828 0.41 -0.3 949,561 + Pf1N1B4_828 0.41 -2.3 949,561 + Pf1N1B4_828 0.41 -2.0 949,562 - +0.6 949,562 - Pf1N1B4_828 0.41 -1.8 949,632 + +0.0 949,632 + Pf1N1B4_828 0.46 +0.3 949,632 + Pf1N1B4_828 0.46 -1.3 949,632 + Pf1N1B4_828 0.46 +0.0 949,632 + Pf1N1B4_828 0.46 -0.5 949,633 - Pf1N1B4_828 0.47 -0.4 949,633 - Pf1N1B4_828 0.47 -0.8 949,633 - Pf1N1B4_828 0.47 -2.3 949,633 - Pf1N1B4_828 0.47 +0.0 949,668 + Pf1N1B4_828 0.49 +0.0 949,965 + Pf1N1B4_828 0.71 -0.4 949,966 - Pf1N1B4_828 0.71 -1.3 949,966 - Pf1N1B4_828 0.71 +0.4 949,993 + Pf1N1B4_828 0.73 -1.0 949,993 + Pf1N1B4_828 0.73 -1.2 949,994 - +0.0 949,995 + Pf1N1B4_828 0.73 +0.4 949,995 + Pf1N1B4_828 0.73 +0.0 949,996 - Pf1N1B4_828 0.73 -1.0 950,037 + Pf1N1B4_828 0.76 -1.5 950,037 + Pf1N1B4_828 0.76 -1.0 950,038 - Pf1N1B4_828 0.76 +1.0 950,038 - Pf1N1B4_828 0.76 -0.5 950,244 + -1.3 950,245 - +2.5 950,245 - -0.6 950,245 - +0.0 950,245 - +2.0 950,345 + +0.0 950,346 - +0.8 950,346 - +0.2 950,346 - +1.6 950,378 + -0.3 950,378 + +0.6 950,378 + -1.0 950,378 + +0.0 950,378 + +0.6 950,378 + -0.5 950,378 + +0.3 950,378 + -0.7 950,378 + -0.5 950,378 + +2.0 950,379 - -0.4 950,379 - +1.4 950,379 - +0.0 950,379 - +0.3 950,379 - +1.0 950,379 - -0.3 950,379 - -0.4 950,387 + +0.0 950,387 + +0.6 950,387 + +0.0 950,387 + -1.0 950,388 - +0.7 950,388 - +1.6 950,490 + -0.1 950,491 - +0.6 950,517 + -0.3 950,517 + -0.3 950,517 + +0.0 950,517 + +1.4 950,517 + +0.5 950,518 - -0.4 950,518 - -0.2 950,518 - +0.0 950,533 - -1.0 950,542 - +1.0 950,542 - +0.4 950,542 - +2.0 950,612 - -0.5 950,636 + -2.3 950,636 + +2.5 950,664 - -2.3 950,664 - +2.4 950,743 - +0.3 950,753 - +0.8 950,768 - +0.0 950,775 - -0.5 950,775 - -2.8 950,820 + -0.4 950,820 + +0.5 950,821 - +1.8 950,821 - -1.3 950,821 - +0.0 950,838 - -1.0 950,865 - +0.5 950,890 + -1.2 950,890 + -1.0 950,890 + +0.4 950,891 - -1.0 950,891 - -1.0 950,891 - +1.7 950,891 - -0.3 950,891 - -0.4 950,894 + -0.2 950,894 + -0.7 950,894 + -1.0 950,894 + -0.4 950,895 - -2.1 950,895 - -0.8 950,895 - +0.4 950,895 - +0.6 950,895 - -3.0 950,915 - +0.8 950,927 - -1.0 950,927 - +0.5 950,927 - +1.9 950,927 - -1.5 951,106 + Pf1N1B4_829 0.31 -1.0 951,107 - Pf1N1B4_829 0.31 -0.5 951,265 + Pf1N1B4_829 0.50 +1.9 951,265 + Pf1N1B4_829 0.50 +1.2 951,266 - Pf1N1B4_829 0.50 +0.5 951,266 - Pf1N1B4_829 0.50 +1.0 951,266 - Pf1N1B4_829 0.50 +1.8 951,292 + Pf1N1B4_829 0.54 +0.7 951,292 + Pf1N1B4_829 0.54 +1.6 951,292 + Pf1N1B4_829 0.54 +1.0 951,292 + +1.0 951,293 - Pf1N1B4_829 0.54 +1.8 951,293 - Pf1N1B4_829 0.54 +0.0 951,293 - Pf1N1B4_829 0.54 +0.7 951,293 - Pf1N1B4_829 0.54 +1.0 951,293 - Pf1N1B4_829 0.54 +2.4 951,293 - Pf1N1B4_829 0.54 +1.0 951,293 - Pf1N1B4_829 0.54 +0.9
Or see this region's nucleotide sequence