Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_808

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_806 and Pf1N1B4_807 are separated by 214 nucleotidesPf1N1B4_807 and Pf1N1B4_808 are separated by 4 nucleotidesPf1N1B4_808 and Pf1N1B4_809 are separated by 568 nucleotides Pf1N1B4_806 - hypothetical protein, at 922,710 to 924,479 _806 Pf1N1B4_807 - hypothetical protein, at 924,694 to 925,332 _807 Pf1N1B4_808 - hypothetical protein, at 925,337 to 925,477 _808 Pf1N1B4_809 - Adhesin major subunit pilin, at 926,046 to 926,540 _809 Position (kb) 925 926Strain fitness (log2 ratio) -2 -1 0 1 2at 924.358 kb on + strandat 924.358 kb on + strandat 924.359 kb on - strandat 924.359 kb on - strandat 924.359 kb on - strandat 924.390 kb on + strandat 924.390 kb on + strandat 924.390 kb on + strandat 924.390 kb on + strandat 924.390 kb on + strandat 924.391 kb on - strandat 924.542 kb on - strandat 924.671 kb on - strandat 924.697 kb on + strandat 924.698 kb on - strandat 924.734 kb on + strandat 924.734 kb on + strandat 924.734 kb on + strandat 924.735 kb on - strandat 924.764 kb on + strandat 924.764 kb on + strand, within Pf1N1B4_807at 924.764 kb on + strand, within Pf1N1B4_807at 924.765 kb on - strand, within Pf1N1B4_807at 924.765 kb on - strand, within Pf1N1B4_807at 924.765 kb on - strand, within Pf1N1B4_807at 924.765 kb on - strand, within Pf1N1B4_807at 924.765 kb on - strand, within Pf1N1B4_807at 924.765 kb on - strand, within Pf1N1B4_807at 924.765 kb on - strand, within Pf1N1B4_807at 924.765 kb on - strand, within Pf1N1B4_807at 924.773 kb on + strandat 924.773 kb on + strand, within Pf1N1B4_807at 924.773 kb on + strand, within Pf1N1B4_807at 924.774 kb on - strand, within Pf1N1B4_807at 924.774 kb on - strand, within Pf1N1B4_807at 924.799 kb on + strand, within Pf1N1B4_807at 924.799 kb on + strand, within Pf1N1B4_807at 924.800 kb on - strandat 924.821 kb on + strand, within Pf1N1B4_807at 924.822 kb on - strand, within Pf1N1B4_807at 924.822 kb on - strand, within Pf1N1B4_807at 924.837 kb on - strand, within Pf1N1B4_807at 924.865 kb on + strand, within Pf1N1B4_807at 924.866 kb on - strand, within Pf1N1B4_807at 924.866 kb on - strand, within Pf1N1B4_807at 924.983 kb on + strand, within Pf1N1B4_807at 925.039 kb on - strand, within Pf1N1B4_807at 925.039 kb on - strand, within Pf1N1B4_807at 925.039 kb on - strand, within Pf1N1B4_807at 925.128 kb on + strandat 925.129 kb on - strand, within Pf1N1B4_807at 925.129 kb on - strand, within Pf1N1B4_807at 925.129 kb on - strand, within Pf1N1B4_807at 925.147 kb on - strand, within Pf1N1B4_807at 925.161 kb on + strand, within Pf1N1B4_807at 925.162 kb on - strand, within Pf1N1B4_807at 925.162 kb on - strand, within Pf1N1B4_807at 925.162 kb on - strand, within Pf1N1B4_807at 925.162 kb on - strand, within Pf1N1B4_807at 925.256 kb on + strand, within Pf1N1B4_807at 925.256 kb on + strand, within Pf1N1B4_807at 925.273 kb on - strandat 925.319 kb on + strandat 925.341 kb on - strandat 925.433 kb on + strand, within Pf1N1B4_808at 925.433 kb on + strand, within Pf1N1B4_808at 925.433 kb on + strand, within Pf1N1B4_808at 925.433 kb on + strand, within Pf1N1B4_808at 925.433 kb on + strand, within Pf1N1B4_808at 925.433 kb on + strand, within Pf1N1B4_808at 925.433 kb on + strand, within Pf1N1B4_808at 925.433 kb on + strand, within Pf1N1B4_808at 925.433 kb on + strand, within Pf1N1B4_808at 925.433 kb on + strand, within Pf1N1B4_808at 925.433 kb on + strand, within Pf1N1B4_808at 925.433 kb on + strandat 925.434 kb on - strand, within Pf1N1B4_808at 925.434 kb on - strand, within Pf1N1B4_808at 925.434 kb on - strand, within Pf1N1B4_808at 925.434 kb on - strand, within Pf1N1B4_808at 925.434 kb on - strand, within Pf1N1B4_808at 925.573 kb on + strandat 925.573 kb on + strandat 925.573 kb on + strandat 925.573 kb on + strandat 925.573 kb on + strandat 925.573 kb on + strandat 925.573 kb on + strandat 925.573 kb on + strandat 925.573 kb on + strandat 925.573 kb on + strandat 925.573 kb on + strandat 925.573 kb on + strandat 925.573 kb on + strandat 925.573 kb on + strandat 925.574 kb on - strandat 925.574 kb on - strandat 925.574 kb on - strandat 925.574 kb on - strandat 925.574 kb on - strandat 925.574 kb on - strandat 925.574 kb on - strandat 925.574 kb on - strandat 925.574 kb on - strandat 925.574 kb on - strandat 925.577 kb on + strandat 925.590 kb on + strandat 925.600 kb on - strandat 925.883 kb on - strandat 925.883 kb on - strandat 925.883 kb on - strandat 925.927 kb on + strandat 926.089 kb on + strandat 926.090 kb on - strandat 926.090 kb on - strandat 926.090 kb on - strandat 926.102 kb on + strand, within Pf1N1B4_809at 926.102 kb on + strand, within Pf1N1B4_809at 926.102 kb on + strand, within Pf1N1B4_809at 926.102 kb on + strand, within Pf1N1B4_809at 926.102 kb on + strand, within Pf1N1B4_809at 926.102 kb on + strand, within Pf1N1B4_809at 926.102 kb on + strand, within Pf1N1B4_809at 926.103 kb on - strand, within Pf1N1B4_809at 926.104 kb on + strand, within Pf1N1B4_809at 926.236 kb on + strand, within Pf1N1B4_809at 926.236 kb on + strand, within Pf1N1B4_809at 926.236 kb on + strand, within Pf1N1B4_809at 926.236 kb on + strand, within Pf1N1B4_809at 926.236 kb on + strand, within Pf1N1B4_809at 926.236 kb on + strand, within Pf1N1B4_809at 926.236 kb on + strand, within Pf1N1B4_809at 926.236 kb on + strand, within Pf1N1B4_809at 926.236 kb on + strand, within Pf1N1B4_809at 926.237 kb on - strand, within Pf1N1B4_809at 926.237 kb on - strand, within Pf1N1B4_809at 926.237 kb on - strandat 926.237 kb on - strand, within Pf1N1B4_809at 926.267 kb on + strand, within Pf1N1B4_809at 926.267 kb on + strand, within Pf1N1B4_809at 926.268 kb on - strand, within Pf1N1B4_809at 926.268 kb on - strand, within Pf1N1B4_809at 926.269 kb on + strand, within Pf1N1B4_809at 926.269 kb on + strand, within Pf1N1B4_809at 926.270 kb on - strand, within Pf1N1B4_809at 926.270 kb on - strand, within Pf1N1B4_809at 926.270 kb on - strand, within Pf1N1B4_809at 926.326 kb on + strandat 926.326 kb on + strand, within Pf1N1B4_809at 926.326 kb on + strand, within Pf1N1B4_809at 926.326 kb on + strand, within Pf1N1B4_809at 926.327 kb on - strand, within Pf1N1B4_809at 926.354 kb on + strand, within Pf1N1B4_809at 926.354 kb on + strand, within Pf1N1B4_809at 926.355 kb on - strand, within Pf1N1B4_809at 926.416 kb on + strand, within Pf1N1B4_809at 926.416 kb on + strand, within Pf1N1B4_809

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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924,358 + +1.6
924,358 + -1.0
924,359 - +1.0
924,359 - -1.0
924,359 - -0.2
924,390 + -0.2
924,390 + -0.6
924,390 + -1.6
924,390 + +1.6
924,390 + -1.6
924,391 - -0.6
924,542 - +1.6
924,671 - +0.6
924,697 + +1.0
924,698 - +0.9
924,734 + +0.0
924,734 + -0.2
924,734 + +0.0
924,735 - +0.4
924,764 + +0.0
924,764 + Pf1N1B4_807 0.11 -0.8
924,764 + Pf1N1B4_807 0.11 +0.0
924,765 - Pf1N1B4_807 0.11 -0.2
924,765 - Pf1N1B4_807 0.11 +0.2
924,765 - Pf1N1B4_807 0.11 +0.8
924,765 - Pf1N1B4_807 0.11 -1.3
924,765 - Pf1N1B4_807 0.11 -1.0
924,765 - Pf1N1B4_807 0.11 +0.0
924,765 - Pf1N1B4_807 0.11 +1.0
924,765 - Pf1N1B4_807 0.11 -0.7
924,773 + +0.6
924,773 + Pf1N1B4_807 0.12 +1.6
924,773 + Pf1N1B4_807 0.12 +0.0
924,774 - Pf1N1B4_807 0.13 +0.0
924,774 - Pf1N1B4_807 0.13 +2.0
924,799 + Pf1N1B4_807 0.16 +0.0
924,799 + Pf1N1B4_807 0.16 +0.0
924,800 - +2.0
924,821 + Pf1N1B4_807 0.20 +1.6
924,822 - Pf1N1B4_807 0.20 -1.1
924,822 - Pf1N1B4_807 0.20 +0.4
924,837 - Pf1N1B4_807 0.22 -1.2
924,865 + Pf1N1B4_807 0.27 -0.7
924,866 - Pf1N1B4_807 0.27 -0.3
924,866 - Pf1N1B4_807 0.27 -0.2
924,983 + Pf1N1B4_807 0.45 -0.4
925,039 - Pf1N1B4_807 0.54 +2.0
925,039 - Pf1N1B4_807 0.54 +0.7
925,039 - Pf1N1B4_807 0.54 +0.6
925,128 + -0.4
925,129 - Pf1N1B4_807 0.68 +1.6
925,129 - Pf1N1B4_807 0.68 -0.6
925,129 - Pf1N1B4_807 0.68 +0.0
925,147 - Pf1N1B4_807 0.71 -2.6
925,161 + Pf1N1B4_807 0.73 -1.0
925,162 - Pf1N1B4_807 0.73 +0.0
925,162 - Pf1N1B4_807 0.73 -0.8
925,162 - Pf1N1B4_807 0.73 +1.6
925,162 - Pf1N1B4_807 0.73 -1.0
925,256 + Pf1N1B4_807 0.88 -1.0
925,256 + Pf1N1B4_807 0.88 -0.9
925,273 - +0.0
925,319 + +0.8
925,341 - +1.2
925,433 + Pf1N1B4_808 0.68 +1.0
925,433 + Pf1N1B4_808 0.68 +0.3
925,433 + Pf1N1B4_808 0.68 +2.0
925,433 + Pf1N1B4_808 0.68 +2.0
925,433 + Pf1N1B4_808 0.68 -2.0
925,433 + Pf1N1B4_808 0.68 +0.1
925,433 + Pf1N1B4_808 0.68 -0.2
925,433 + Pf1N1B4_808 0.68 +1.8
925,433 + Pf1N1B4_808 0.68 +1.0
925,433 + Pf1N1B4_808 0.68 -1.3
925,433 + Pf1N1B4_808 0.68 +0.3
925,433 + -1.0
925,434 - Pf1N1B4_808 0.69 +1.0
925,434 - Pf1N1B4_808 0.69 +1.0
925,434 - Pf1N1B4_808 0.69 -0.6
925,434 - Pf1N1B4_808 0.69 +1.8
925,434 - Pf1N1B4_808 0.69 +0.3
925,573 + -1.0
925,573 + +0.6
925,573 + +0.0
925,573 + +0.0
925,573 + +0.0
925,573 + -1.6
925,573 + +1.0
925,573 + -1.0
925,573 + -0.3
925,573 + +0.5
925,573 + +0.8
925,573 + -0.4
925,573 + +0.8
925,573 + +0.0
925,574 - +0.0
925,574 - +1.6
925,574 - +0.8
925,574 - +0.0
925,574 - +0.6
925,574 - +0.0
925,574 - -1.0
925,574 - -2.0
925,574 - +0.0
925,574 - -1.3
925,577 + +0.4
925,590 + +1.3
925,600 - -2.0
925,883 - -1.0
925,883 - -0.6
925,883 - -0.4
925,927 + -1.3
926,089 + -0.5
926,090 - +1.0
926,090 - +1.0
926,090 - +1.6
926,102 + Pf1N1B4_809 0.11 -0.7
926,102 + Pf1N1B4_809 0.11 +0.1
926,102 + Pf1N1B4_809 0.11 -0.2
926,102 + Pf1N1B4_809 0.11 +1.6
926,102 + Pf1N1B4_809 0.11 -0.2
926,102 + Pf1N1B4_809 0.11 +0.5
926,102 + Pf1N1B4_809 0.11 -1.1
926,103 - Pf1N1B4_809 0.12 +0.2
926,104 + Pf1N1B4_809 0.12 +0.8
926,236 + Pf1N1B4_809 0.38 +0.4
926,236 + Pf1N1B4_809 0.38 -0.3
926,236 + Pf1N1B4_809 0.38 +0.7
926,236 + Pf1N1B4_809 0.38 +0.1
926,236 + Pf1N1B4_809 0.38 +1.3
926,236 + Pf1N1B4_809 0.38 -1.5
926,236 + Pf1N1B4_809 0.38 +0.4
926,236 + Pf1N1B4_809 0.38 +2.0
926,236 + Pf1N1B4_809 0.38 +0.9
926,237 - Pf1N1B4_809 0.39 -0.4
926,237 - Pf1N1B4_809 0.39 +0.0
926,237 - +0.8
926,237 - Pf1N1B4_809 0.39 +0.7
926,267 + Pf1N1B4_809 0.45 +0.6
926,267 + Pf1N1B4_809 0.45 +1.0
926,268 - Pf1N1B4_809 0.45 +0.3
926,268 - Pf1N1B4_809 0.45 +1.6
926,269 + Pf1N1B4_809 0.45 +1.0
926,269 + Pf1N1B4_809 0.45 -0.8
926,270 - Pf1N1B4_809 0.45 -0.4
926,270 - Pf1N1B4_809 0.45 -0.5
926,270 - Pf1N1B4_809 0.45 +0.6
926,326 + +1.6
926,326 + Pf1N1B4_809 0.57 +2.0
926,326 + Pf1N1B4_809 0.57 +2.6
926,326 + Pf1N1B4_809 0.57 -1.0
926,327 - Pf1N1B4_809 0.57 +0.6
926,354 + Pf1N1B4_809 0.62 +0.8
926,354 + Pf1N1B4_809 0.62 +1.5
926,355 - Pf1N1B4_809 0.62 -0.5
926,416 + Pf1N1B4_809 0.75 +1.0
926,416 + Pf1N1B4_809 0.75 -1.3

Or see this region's nucleotide sequence