Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_675 and Pf1N1B4_676 are separated by 146 nucleotides Pf1N1B4_676 and Pf1N1B4_677 are separated by 222 nucleotides Pf1N1B4_677 and Pf1N1B4_678 are separated by 257 nucleotides
Pf1N1B4_675 - hypothetical protein, at 773,129 to 773,347
_675
Pf1N1B4_676 - FIG00953991: hypothetical protein, at 773,494 to 773,853
_676
Pf1N1B4_677 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 774,076 to 774,390
_677
Pf1N1B4_678 - Pyruvate kinase (EC 2.7.1.40), at 774,648 to 776,099
_678
Position (kb) 773
774 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 772.597 kb on + strand at 772.651 kb on + strand at 772.652 kb on - strand at 772.672 kb on + strand at 772.672 kb on + strand at 772.672 kb on + strand at 772.673 kb on - strand at 772.673 kb on - strand at 772.716 kb on + strand at 772.717 kb on - strand at 772.717 kb on - strand at 772.720 kb on - strand at 772.734 kb on - strand at 772.748 kb on - strand at 772.825 kb on - strand at 772.852 kb on + strand at 772.852 kb on + strand at 772.852 kb on + strand at 772.852 kb on + strand at 772.852 kb on + strand at 772.894 kb on + strand at 772.894 kb on + strand at 772.894 kb on + strand at 772.894 kb on + strand at 772.894 kb on + strand at 772.895 kb on - strand at 772.895 kb on - strand at 772.895 kb on - strand at 772.895 kb on - strand at 772.895 kb on - strand at 772.922 kb on + strand at 773.066 kb on + strand at 773.067 kb on - strand at 773.086 kb on + strand at 773.187 kb on - strand, within Pf1N1B4_675 at 773.187 kb on - strand, within Pf1N1B4_675 at 773.187 kb on - strand, within Pf1N1B4_675 at 773.274 kb on - strand, within Pf1N1B4_675 at 773.274 kb on - strand, within Pf1N1B4_675 at 773.274 kb on - strand, within Pf1N1B4_675 at 773.345 kb on + strand at 773.346 kb on - strand at 773.352 kb on + strand at 773.352 kb on + strand at 773.353 kb on - strand at 773.357 kb on - strand at 773.357 kb on - strand at 773.357 kb on - strand at 773.425 kb on + strand at 773.425 kb on + strand at 773.426 kb on - strand at 773.426 kb on - strand at 773.426 kb on - strand at 773.426 kb on - strand at 773.426 kb on - strand at 773.474 kb on + strand at 773.475 kb on - strand at 773.528 kb on + strand at 773.529 kb on - strand at 773.529 kb on - strand at 773.597 kb on + strand, within Pf1N1B4_676 at 773.597 kb on + strand, within Pf1N1B4_676 at 773.597 kb on + strand, within Pf1N1B4_676 at 773.598 kb on - strand, within Pf1N1B4_676 at 773.598 kb on - strand, within Pf1N1B4_676 at 773.598 kb on - strand, within Pf1N1B4_676 at 773.698 kb on - strand, within Pf1N1B4_676 at 773.761 kb on - strand, within Pf1N1B4_676 at 773.813 kb on + strand, within Pf1N1B4_676 at 773.896 kb on + strand at 773.897 kb on - strand at 773.918 kb on - strand at 773.918 kb on - strand at 773.925 kb on + strand at 773.925 kb on + strand at 773.925 kb on + strand at 773.925 kb on + strand at 773.926 kb on - strand at 773.926 kb on - strand at 773.928 kb on - strand at 773.928 kb on - strand at 773.928 kb on - strand at 773.928 kb on - strand at 773.986 kb on + strand at 774.008 kb on + strand at 774.009 kb on - strand at 774.018 kb on + strand at 774.019 kb on - strand at 774.050 kb on + strand at 774.052 kb on + strand at 774.052 kb on + strand at 774.052 kb on + strand at 774.052 kb on + strand at 774.052 kb on + strand at 774.052 kb on + strand at 774.052 kb on + strand at 774.052 kb on + strand at 774.052 kb on + strand at 774.052 kb on + strand at 774.052 kb on + strand at 774.053 kb on - strand at 774.053 kb on - strand at 774.053 kb on - strand at 774.053 kb on - strand at 774.053 kb on - strand at 774.053 kb on - strand at 774.053 kb on - strand at 774.053 kb on - strand at 774.053 kb on - strand at 774.053 kb on - strand at 774.207 kb on - strand, within Pf1N1B4_677 at 774.207 kb on - strand, within Pf1N1B4_677 at 774.207 kb on - strand, within Pf1N1B4_677 at 774.226 kb on - strand, within Pf1N1B4_677 at 774.284 kb on + strand, within Pf1N1B4_677 at 774.284 kb on + strand, within Pf1N1B4_677 at 774.284 kb on + strand, within Pf1N1B4_677 at 774.284 kb on + strand, within Pf1N1B4_677 at 774.284 kb on + strand, within Pf1N1B4_677 at 774.284 kb on + strand, within Pf1N1B4_677 at 774.285 kb on - strand, within Pf1N1B4_677 at 774.285 kb on - strand, within Pf1N1B4_677 at 774.285 kb on - strand, within Pf1N1B4_677 at 774.285 kb on - strand, within Pf1N1B4_677 at 774.285 kb on - strand, within Pf1N1B4_677 at 774.285 kb on - strand, within Pf1N1B4_677 at 774.285 kb on - strand, within Pf1N1B4_677 at 774.285 kb on - strand, within Pf1N1B4_677 at 774.365 kb on + strand at 774.365 kb on + strand at 774.365 kb on + strand at 774.366 kb on - strand at 774.366 kb on - strand at 774.366 kb on - strand at 774.486 kb on - strand at 774.549 kb on + strand at 774.549 kb on + strand at 774.549 kb on + strand at 774.550 kb on - strand at 774.550 kb on - strand at 774.550 kb on - strand at 774.550 kb on - strand at 774.550 kb on - strand at 774.550 kb on - strand at 774.550 kb on - strand at 774.575 kb on - strand at 774.575 kb on - strand at 774.594 kb on + strand at 774.595 kb on - strand at 774.600 kb on + strand at 774.600 kb on + strand at 774.600 kb on + strand at 774.601 kb on - strand at 774.601 kb on - strand at 774.601 kb on - strand at 774.609 kb on + strand at 774.609 kb on + strand at 774.610 kb on - strand at 774.610 kb on - strand at 774.610 kb on - strand at 774.610 kb on - strand at 774.610 kb on - strand at 774.610 kb on - strand at 774.612 kb on + strand at 774.612 kb on + strand at 774.612 kb on + strand at 774.613 kb on - strand at 774.613 kb on - strand at 774.613 kb on - strand at 774.613 kb on - strand at 774.613 kb on - strand at 774.613 kb on - strand at 774.643 kb on + strand at 774.643 kb on + strand at 774.643 kb on + strand at 774.643 kb on + strand at 774.643 kb on + strand at 774.644 kb on - strand at 774.644 kb on - strand at 774.644 kb on - strand at 774.644 kb on - strand at 774.644 kb on - strand at 774.644 kb on - strand at 774.644 kb on - strand at 774.678 kb on - strand at 774.695 kb on + strand at 774.696 kb on - strand at 774.696 kb on - strand at 774.696 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 772,597 + -1.6 772,651 + -1.0 772,652 - +1.0 772,672 + -0.7 772,672 + +1.0 772,672 + -0.0 772,673 - -0.0 772,673 - -0.2 772,716 + -0.6 772,717 - -1.6 772,717 - -0.3 772,720 - +1.0 772,734 - -0.0 772,748 - -0.6 772,825 - -0.6 772,852 + +1.1 772,852 + -0.0 772,852 + +0.3 772,852 + +1.3 772,852 + +0.4 772,894 + -1.6 772,894 + -0.4 772,894 + +1.0 772,894 + +2.0 772,894 + +1.4 772,895 - +0.3 772,895 - +1.2 772,895 - +1.4 772,895 - +1.0 772,895 - -0.8 772,922 + +1.3 773,066 + +0.5 773,067 - +0.6 773,086 + +0.5 773,187 - Pf1N1B4_675 0.26 +1.3 773,187 - Pf1N1B4_675 0.26 -0.6 773,187 - Pf1N1B4_675 0.26 +0.4 773,274 - Pf1N1B4_675 0.66 -0.0 773,274 - Pf1N1B4_675 0.66 -0.0 773,274 - Pf1N1B4_675 0.66 -0.0 773,345 + -0.8 773,346 - +2.6 773,352 + -0.8 773,352 + -0.0 773,353 - +0.5 773,357 - +2.0 773,357 - +1.6 773,357 - -0.0 773,425 + -0.2 773,425 + +0.4 773,426 - -0.5 773,426 - -1.3 773,426 - +1.0 773,426 - +0.3 773,426 - -1.0 773,474 + +1.0 773,475 - +0.1 773,528 + +1.0 773,529 - +1.0 773,529 - +1.0 773,597 + Pf1N1B4_676 0.29 -3.2 773,597 + Pf1N1B4_676 0.29 +1.6 773,597 + Pf1N1B4_676 0.29 +0.3 773,598 - Pf1N1B4_676 0.29 -1.0 773,598 - Pf1N1B4_676 0.29 -0.6 773,598 - Pf1N1B4_676 0.29 -0.7 773,698 - Pf1N1B4_676 0.57 -1.6 773,761 - Pf1N1B4_676 0.74 -0.8 773,813 + Pf1N1B4_676 0.89 -1.3 773,896 + -1.0 773,897 - +1.4 773,918 - -0.6 773,918 - +1.6 773,925 + +1.4 773,925 + -0.0 773,925 + +0.8 773,925 + -0.6 773,926 - +0.6 773,926 - +0.6 773,928 - -0.9 773,928 - -1.2 773,928 - +0.7 773,928 - +0.1 773,986 + -1.6 774,008 + -0.7 774,009 - +0.9 774,018 + +1.0 774,019 - +2.0 774,050 + -0.8 774,052 + -0.6 774,052 + +1.0 774,052 + -0.0 774,052 + -1.0 774,052 + -0.4 774,052 + -0.6 774,052 + +0.2 774,052 + +0.2 774,052 + -2.6 774,052 + +0.4 774,052 + +1.2 774,053 - +0.6 774,053 - +0.3 774,053 - -0.0 774,053 - -0.6 774,053 - -0.6 774,053 - -0.6 774,053 - -0.6 774,053 - +1.0 774,053 - +0.6 774,053 - +0.1 774,207 - Pf1N1B4_677 0.42 +2.1 774,207 - Pf1N1B4_677 0.42 +0.8 774,207 - Pf1N1B4_677 0.42 +1.6 774,226 - Pf1N1B4_677 0.48 -2.6 774,284 + Pf1N1B4_677 0.66 +1.3 774,284 + Pf1N1B4_677 0.66 -0.9 774,284 + Pf1N1B4_677 0.66 -0.6 774,284 + Pf1N1B4_677 0.66 +0.5 774,284 + Pf1N1B4_677 0.66 -0.4 774,284 + Pf1N1B4_677 0.66 -1.6 774,285 - Pf1N1B4_677 0.66 -0.5 774,285 - Pf1N1B4_677 0.66 +0.6 774,285 - Pf1N1B4_677 0.66 -0.0 774,285 - Pf1N1B4_677 0.66 -0.0 774,285 - Pf1N1B4_677 0.66 -1.0 774,285 - Pf1N1B4_677 0.66 +2.1 774,285 - Pf1N1B4_677 0.66 -2.0 774,285 - Pf1N1B4_677 0.66 +0.2 774,365 + -0.0 774,365 + -0.4 774,365 + -0.6 774,366 - -1.4 774,366 - -1.6 774,366 - +0.3 774,486 - +0.6 774,549 + -0.6 774,549 + -0.4 774,549 + -1.0 774,550 - +0.2 774,550 - +0.3 774,550 - -1.6 774,550 - -0.0 774,550 - -0.0 774,550 - +2.0 774,550 - +1.0 774,575 - -0.8 774,575 - -0.0 774,594 + -1.0 774,595 - -0.0 774,600 + +1.0 774,600 + +0.7 774,600 + -0.4 774,601 - -0.1 774,601 - -0.3 774,601 - +1.8 774,609 + +0.5 774,609 + -0.4 774,610 - +1.3 774,610 - +2.8 774,610 - +1.0 774,610 - +0.1 774,610 - +0.6 774,610 - -1.4 774,612 + -0.3 774,612 + -0.7 774,612 + -0.5 774,613 - -0.6 774,613 - +1.0 774,613 - -0.6 774,613 - +1.3 774,613 - +1.0 774,613 - -2.5 774,643 + +0.3 774,643 + -0.8 774,643 + +0.3 774,643 + -1.3 774,643 + -0.0 774,644 - +0.3 774,644 - -1.6 774,644 - -0.8 774,644 - -0.3 774,644 - +1.0 774,644 - -0.8 774,644 - -0.0 774,678 - -0.0 774,695 + +0.2 774,696 - +1.0 774,696 - -1.3 774,696 - +0.1
Or see this region's nucleotide sequence