Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5989

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5987 and Pf1N1B4_5988 overlap by 4 nucleotidesPf1N1B4_5988 and Pf1N1B4_5989 overlap by 28 nucleotidesPf1N1B4_5989 and Pf1N1B4_5990 are separated by 177 nucleotides Pf1N1B4_5987 - FIG067310: hypothetical protein, at 439,298 to 440,068 _5987 Pf1N1B4_5988 - FIG067310: hypothetical protein, at 440,065 to 440,580 _5988 Pf1N1B4_5989 - FIG067310: hypothetical protein, at 440,553 to 441,260 _5989 Pf1N1B4_5990 - FIG00998616: hypothetical protein, at 441,438 to 442,103 _5990 Position (kb) 440 441 442Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 439.566 kb on + strand, within Pf1N1B4_5987at 439.566 kb on + strand, within Pf1N1B4_5987at 439.566 kb on + strand, within Pf1N1B4_5987at 439.566 kb on + strand, within Pf1N1B4_5987at 439.566 kb on + strand, within Pf1N1B4_5987at 439.567 kb on - strand, within Pf1N1B4_5987at 439.567 kb on - strandat 439.737 kb on + strand, within Pf1N1B4_5987at 439.737 kb on + strand, within Pf1N1B4_5987at 439.737 kb on + strand, within Pf1N1B4_5987at 439.798 kb on - strand, within Pf1N1B4_5987at 439.800 kb on + strand, within Pf1N1B4_5987at 439.800 kb on + strand, within Pf1N1B4_5987at 439.801 kb on - strand, within Pf1N1B4_5987at 439.996 kb on + strandat 440.120 kb on + strand, within Pf1N1B4_5988at 440.273 kb on + strand, within Pf1N1B4_5988at 440.492 kb on + strand, within Pf1N1B4_5988at 440.492 kb on + strand, within Pf1N1B4_5988at 440.492 kb on + strand, within Pf1N1B4_5988at 440.492 kb on + strand, within Pf1N1B4_5988at 440.492 kb on + strand, within Pf1N1B4_5988at 440.492 kb on + strand, within Pf1N1B4_5988at 440.492 kb on + strand, within Pf1N1B4_5988at 440.492 kb on + strand, within Pf1N1B4_5988at 440.492 kb on + strand, within Pf1N1B4_5988at 440.492 kb on + strand, within Pf1N1B4_5988at 440.493 kb on - strand, within Pf1N1B4_5988at 440.537 kb on + strandat 440.770 kb on + strand, within Pf1N1B4_5989at 440.770 kb on + strand, within Pf1N1B4_5989at 440.770 kb on + strand, within Pf1N1B4_5989at 440.812 kb on + strand, within Pf1N1B4_5989at 440.812 kb on + strand, within Pf1N1B4_5989at 440.813 kb on - strand, within Pf1N1B4_5989at 440.816 kb on - strand, within Pf1N1B4_5989at 440.828 kb on - strand, within Pf1N1B4_5989at 441.016 kb on + strand, within Pf1N1B4_5989at 441.016 kb on + strand, within Pf1N1B4_5989at 441.085 kb on + strand, within Pf1N1B4_5989at 441.269 kb on - strandat 441.296 kb on + strandat 441.296 kb on + strandat 441.297 kb on - strandat 441.332 kb on + strandat 441.406 kb on + strandat 441.439 kb on + strandat 442.201 kb on + strandat 442.201 kb on + strandat 442.201 kb on + strandat 442.201 kb on + strandat 442.202 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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439,566 + Pf1N1B4_5987 0.35 -0.0
439,566 + Pf1N1B4_5987 0.35 +0.1
439,566 + Pf1N1B4_5987 0.35 -0.4
439,566 + Pf1N1B4_5987 0.35 -0.4
439,566 + Pf1N1B4_5987 0.35 -0.7
439,567 - Pf1N1B4_5987 0.35 -1.4
439,567 - -0.4
439,737 + Pf1N1B4_5987 0.57 +0.9
439,737 + Pf1N1B4_5987 0.57 +1.1
439,737 + Pf1N1B4_5987 0.57 -0.3
439,798 - Pf1N1B4_5987 0.65 +0.0
439,800 + Pf1N1B4_5987 0.65 +2.1
439,800 + Pf1N1B4_5987 0.65 -0.0
439,801 - Pf1N1B4_5987 0.65 -0.9
439,996 + -1.8
440,120 + Pf1N1B4_5988 0.11 +0.9
440,273 + Pf1N1B4_5988 0.40 +1.1
440,492 + Pf1N1B4_5988 0.83 -1.9
440,492 + Pf1N1B4_5988 0.83 -1.9
440,492 + Pf1N1B4_5988 0.83 -0.0
440,492 + Pf1N1B4_5988 0.83 +1.1
440,492 + Pf1N1B4_5988 0.83 -0.2
440,492 + Pf1N1B4_5988 0.83 +0.3
440,492 + Pf1N1B4_5988 0.83 +0.6
440,492 + Pf1N1B4_5988 0.83 -0.4
440,492 + Pf1N1B4_5988 0.83 +0.6
440,492 + Pf1N1B4_5988 0.83 -0.2
440,493 - Pf1N1B4_5988 0.83 +1.7
440,537 + -0.0
440,770 + Pf1N1B4_5989 0.31 +1.4
440,770 + Pf1N1B4_5989 0.31 +1.6
440,770 + Pf1N1B4_5989 0.31 -0.8
440,812 + Pf1N1B4_5989 0.37 -2.0
440,812 + Pf1N1B4_5989 0.37 +1.1
440,813 - Pf1N1B4_5989 0.37 -0.4
440,816 - Pf1N1B4_5989 0.37 -1.4
440,828 - Pf1N1B4_5989 0.39 -1.0
441,016 + Pf1N1B4_5989 0.65 -2.4
441,016 + Pf1N1B4_5989 0.65 -0.4
441,085 + Pf1N1B4_5989 0.75 -2.0
441,269 - -0.0
441,296 + -1.8
441,296 + -2.8
441,297 - +1.1
441,332 + -0.3
441,406 + -0.0
441,439 + -2.0
442,201 + +0.3
442,201 + +1.0
442,201 + -0.1
442,201 + -0.6
442,202 - +0.4

Or see this region's nucleotide sequence