Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5830 and Pf1N1B4_5831 are separated by 354 nucleotides Pf1N1B4_5831 and Pf1N1B4_5832 are separated by 144 nucleotides
Pf1N1B4_5830 - FIG023677: hypothetical protein, at 264,386 to 265,153
_5830
Pf1N1B4_5831 - SAM-dependent methyltransferases, at 265,508 to 266,557
_5831
Pf1N1B4_5832 - LysR family transcriptional regulator near succinyl-CoA:3-ketoacid-coenzyme A transferase, at 266,702 to 267,601
_5832
Position (kb) 265
266
267 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 264.672 kb on + strand, within Pf1N1B4_5830 at 264.771 kb on + strand, within Pf1N1B4_5830 at 264.883 kb on - strand, within Pf1N1B4_5830 at 264.906 kb on + strand at 264.924 kb on + strand, within Pf1N1B4_5830 at 264.925 kb on - strand, within Pf1N1B4_5830 at 265.359 kb on - strand at 265.359 kb on - strand at 265.378 kb on - strand at 265.384 kb on - strand at 265.384 kb on - strand at 265.384 kb on - strand at 265.802 kb on + strand, within Pf1N1B4_5831 at 265.802 kb on + strand, within Pf1N1B4_5831 at 265.950 kb on - strand, within Pf1N1B4_5831 at 266.108 kb on + strand, within Pf1N1B4_5831 at 266.217 kb on - strand, within Pf1N1B4_5831 at 266.231 kb on + strand at 266.231 kb on + strand, within Pf1N1B4_5831 at 266.285 kb on + strand, within Pf1N1B4_5831 at 266.286 kb on - strand, within Pf1N1B4_5831 at 266.381 kb on + strand, within Pf1N1B4_5831 at 266.382 kb on - strand, within Pf1N1B4_5831 at 266.398 kb on + strand, within Pf1N1B4_5831 at 266.399 kb on - strand, within Pf1N1B4_5831 at 266.552 kb on - strand at 266.556 kb on - strand at 267.026 kb on - strand, within Pf1N1B4_5832 at 267.120 kb on + strand, within Pf1N1B4_5832 at 267.121 kb on - strand, within Pf1N1B4_5832 at 267.173 kb on + strand, within Pf1N1B4_5832
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 264,672 + Pf1N1B4_5830 0.37 +0.6 264,771 + Pf1N1B4_5830 0.50 -1.4 264,883 - Pf1N1B4_5830 0.65 +0.2 264,906 + -0.4 264,924 + Pf1N1B4_5830 0.70 -0.2 264,925 - Pf1N1B4_5830 0.70 -0.8 265,359 - -0.9 265,359 - +0.1 265,378 - -1.2 265,384 - -0.4 265,384 - -2.8 265,384 - +0.3 265,802 + Pf1N1B4_5831 0.28 -0.7 265,802 + Pf1N1B4_5831 0.28 -0.1 265,950 - Pf1N1B4_5831 0.42 -0.4 266,108 + Pf1N1B4_5831 0.57 -0.4 266,217 - Pf1N1B4_5831 0.68 -0.0 266,231 + +0.1 266,231 + Pf1N1B4_5831 0.69 -1.3 266,285 + Pf1N1B4_5831 0.74 +0.7 266,286 - Pf1N1B4_5831 0.74 -2.0 266,381 + Pf1N1B4_5831 0.83 -0.9 266,382 - Pf1N1B4_5831 0.83 -0.1 266,398 + Pf1N1B4_5831 0.85 -1.4 266,399 - Pf1N1B4_5831 0.85 -1.4 266,552 - +0.3 266,556 - -0.7 267,026 - Pf1N1B4_5832 0.36 -2.0 267,120 + Pf1N1B4_5832 0.46 -1.6 267,121 - Pf1N1B4_5832 0.47 +2.6 267,173 + Pf1N1B4_5832 0.52 +0.4
Or see this region's nucleotide sequence