Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5829

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5828 and Pf1N1B4_5829 are separated by 124 nucleotidesPf1N1B4_5829 and Pf1N1B4_5830 are separated by 3 nucleotides Pf1N1B4_5828 - Mobile element protein, at 262,198 to 263,499 _5828 Pf1N1B4_5829 - FIG005107: hypothetical protein, at 263,624 to 264,382 _5829 Pf1N1B4_5830 - FIG023677: hypothetical protein, at 264,386 to 265,153 _5830 Position (kb) 263 264 265Strain fitness (log2 ratio) -1 0 1at 263.507 kb on + strandat 263.511 kb on + strandat 263.515 kb on + strandat 263.515 kb on + strandat 263.920 kb on - strand, within Pf1N1B4_5829at 264.037 kb on - strand, within Pf1N1B4_5829at 264.498 kb on + strand, within Pf1N1B4_5830at 264.499 kb on - strand, within Pf1N1B4_5830at 264.672 kb on + strand, within Pf1N1B4_5830at 264.771 kb on + strand, within Pf1N1B4_5830at 264.883 kb on - strand, within Pf1N1B4_5830at 264.906 kb on + strandat 264.924 kb on + strand, within Pf1N1B4_5830at 264.925 kb on - strand, within Pf1N1B4_5830at 265.359 kb on - strandat 265.359 kb on - strandat 265.378 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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263,507 + +0.3
263,511 + -0.0
263,515 + -1.5
263,515 + +0.8
263,920 - Pf1N1B4_5829 0.39 -0.9
264,037 - Pf1N1B4_5829 0.54 -0.7
264,498 + Pf1N1B4_5830 0.15 +0.9
264,499 - Pf1N1B4_5830 0.15 +0.1
264,672 + Pf1N1B4_5830 0.37 +0.6
264,771 + Pf1N1B4_5830 0.50 -1.4
264,883 - Pf1N1B4_5830 0.65 +0.2
264,906 + -0.4
264,924 + Pf1N1B4_5830 0.70 -0.2
264,925 - Pf1N1B4_5830 0.70 -0.8
265,359 - -0.9
265,359 - +0.1
265,378 - -1.2

Or see this region's nucleotide sequence