Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_558 and Pf1N1B4_559 are separated by 67 nucleotides Pf1N1B4_559 and Pf1N1B4_560 are separated by 65 nucleotides Pf1N1B4_560 and Pf1N1B4_561 are separated by 99 nucleotides Pf1N1B4_561 and Pf1N1B4_562 are separated by 143 nucleotides
Pf1N1B4_558 - Gluconate utilization system Gnt-I transcriptional repressor, at 655,222 to 656,253
_558
Pf1N1B4_559 - Uncharacterized glutathione S-transferase-like protein, at 656,321 to 656,953
_559
Pf1N1B4_560 - Transcriptional regulators, LysR family, at 657,019 to 657,951
_560
Pf1N1B4_561 - Glutathione S-transferase (EC 2.5.1.18), at 658,051 to 658,653
_561
Pf1N1B4_562 - Histidine transporter, periplasmic histidine-binding protein, at 658,797 to 659,810
_562
Position (kb) 657
658 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 656.282 kb on + strand at 656.283 kb on - strand at 656.329 kb on + strand at 656.329 kb on + strand at 656.329 kb on + strand at 656.329 kb on + strand at 656.329 kb on + strand at 656.329 kb on + strand at 656.329 kb on + strand at 656.329 kb on + strand at 656.329 kb on + strand at 656.330 kb on - strand at 656.330 kb on - strand at 656.330 kb on - strand at 656.330 kb on - strand at 656.330 kb on - strand at 656.330 kb on - strand at 656.330 kb on - strand at 656.330 kb on - strand at 656.330 kb on - strand at 656.330 kb on - strand at 656.530 kb on + strand, within Pf1N1B4_559 at 656.530 kb on + strand, within Pf1N1B4_559 at 656.783 kb on + strand, within Pf1N1B4_559 at 656.783 kb on + strand, within Pf1N1B4_559 at 656.783 kb on + strand, within Pf1N1B4_559 at 656.783 kb on + strand, within Pf1N1B4_559 at 656.783 kb on + strand, within Pf1N1B4_559 at 656.783 kb on + strand, within Pf1N1B4_559 at 656.783 kb on + strand, within Pf1N1B4_559 at 656.783 kb on + strand at 656.783 kb on + strand, within Pf1N1B4_559 at 656.783 kb on + strand, within Pf1N1B4_559 at 656.783 kb on + strand, within Pf1N1B4_559 at 656.783 kb on + strand, within Pf1N1B4_559 at 656.783 kb on + strand, within Pf1N1B4_559 at 656.783 kb on + strand, within Pf1N1B4_559 at 656.783 kb on + strand, within Pf1N1B4_559 at 656.783 kb on + strand, within Pf1N1B4_559 at 656.783 kb on + strand, within Pf1N1B4_559 at 656.784 kb on - strand, within Pf1N1B4_559 at 656.784 kb on - strand, within Pf1N1B4_559 at 656.784 kb on - strand, within Pf1N1B4_559 at 656.784 kb on - strand, within Pf1N1B4_559 at 656.784 kb on - strand, within Pf1N1B4_559 at 656.784 kb on - strand, within Pf1N1B4_559 at 656.784 kb on - strand, within Pf1N1B4_559 at 656.784 kb on - strand, within Pf1N1B4_559 at 656.784 kb on - strand, within Pf1N1B4_559 at 656.784 kb on - strand, within Pf1N1B4_559 at 656.784 kb on - strand, within Pf1N1B4_559 at 656.784 kb on - strand, within Pf1N1B4_559 at 656.923 kb on + strand at 657.123 kb on + strand, within Pf1N1B4_560 at 657.124 kb on - strand, within Pf1N1B4_560 at 657.124 kb on - strand, within Pf1N1B4_560 at 657.124 kb on - strand, within Pf1N1B4_560 at 657.124 kb on - strand, within Pf1N1B4_560 at 657.124 kb on - strand, within Pf1N1B4_560 at 657.124 kb on - strand, within Pf1N1B4_560 at 657.187 kb on + strand, within Pf1N1B4_560 at 657.187 kb on + strand, within Pf1N1B4_560 at 657.188 kb on - strand, within Pf1N1B4_560 at 657.957 kb on + strand at 657.958 kb on - strand at 658.013 kb on + strand at 658.013 kb on + strand at 658.013 kb on + strand at 658.014 kb on - strand at 658.060 kb on + strand at 658.060 kb on + strand at 658.060 kb on + strand at 658.060 kb on + strand at 658.060 kb on + strand at 658.060 kb on + strand at 658.060 kb on + strand at 658.061 kb on - strand at 658.061 kb on - strand at 658.061 kb on - strand at 658.061 kb on - strand at 658.061 kb on - strand at 658.264 kb on + strand, within Pf1N1B4_561 at 658.265 kb on - strand, within Pf1N1B4_561 at 658.483 kb on + strand, within Pf1N1B4_561 at 658.483 kb on + strand at 658.483 kb on + strand at 658.483 kb on + strand, within Pf1N1B4_561 at 658.483 kb on + strand, within Pf1N1B4_561 at 658.483 kb on + strand, within Pf1N1B4_561 at 658.519 kb on + strand, within Pf1N1B4_561 at 658.519 kb on + strand, within Pf1N1B4_561 at 658.520 kb on - strand, within Pf1N1B4_561 at 658.527 kb on + strand, within Pf1N1B4_561 at 658.711 kb on + strand at 658.711 kb on + strand at 658.711 kb on + strand at 658.711 kb on + strand at 658.711 kb on + strand at 658.711 kb on + strand at 658.711 kb on + strand at 658.711 kb on + strand at 658.711 kb on + strand at 658.711 kb on + strand at 658.711 kb on + strand at 658.712 kb on - strand at 658.712 kb on - strand at 658.713 kb on + strand at 658.713 kb on + strand at 658.713 kb on + strand at 658.713 kb on + strand at 658.713 kb on + strand at 658.714 kb on - strand at 658.714 kb on - strand at 658.714 kb on - strand at 658.776 kb on + strand at 658.777 kb on - strand at 658.777 kb on - strand at 658.786 kb on + strand at 658.786 kb on + strand at 658.786 kb on + strand at 658.787 kb on - strand at 658.787 kb on - strand at 658.787 kb on - strand at 658.787 kb on - strand at 658.787 kb on - strand at 658.799 kb on - strand at 658.799 kb on - strand at 658.799 kb on - strand at 658.799 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 656,282 + -0.6 656,283 - -0.5 656,329 + -0.1 656,329 + -0.8 656,329 + -1.1 656,329 + -0.1 656,329 + +0.1 656,329 + +0.4 656,329 + +0.4 656,329 + +0.4 656,329 + -0.5 656,330 - -1.1 656,330 - -0.9 656,330 - -0.8 656,330 - +0.7 656,330 - +0.5 656,330 - +1.9 656,330 - +0.5 656,330 - -0.1 656,330 - -0.1 656,330 - +1.5 656,530 + Pf1N1B4_559 0.33 +0.7 656,530 + Pf1N1B4_559 0.33 -0.8 656,783 + Pf1N1B4_559 0.73 -1.4 656,783 + Pf1N1B4_559 0.73 +1.9 656,783 + Pf1N1B4_559 0.73 -0.1 656,783 + Pf1N1B4_559 0.73 -0.3 656,783 + Pf1N1B4_559 0.73 -0.1 656,783 + Pf1N1B4_559 0.73 -1.3 656,783 + Pf1N1B4_559 0.73 -1.6 656,783 + +1.9 656,783 + Pf1N1B4_559 0.73 -1.1 656,783 + Pf1N1B4_559 0.73 +0.5 656,783 + Pf1N1B4_559 0.73 +0.6 656,783 + Pf1N1B4_559 0.73 +0.9 656,783 + Pf1N1B4_559 0.73 -0.1 656,783 + Pf1N1B4_559 0.73 +1.9 656,783 + Pf1N1B4_559 0.73 +0.2 656,783 + Pf1N1B4_559 0.73 +2.3 656,783 + Pf1N1B4_559 0.73 -2.2 656,784 - Pf1N1B4_559 0.73 +1.8 656,784 - Pf1N1B4_559 0.73 -1.6 656,784 - Pf1N1B4_559 0.73 +1.3 656,784 - Pf1N1B4_559 0.73 +0.4 656,784 - Pf1N1B4_559 0.73 +1.9 656,784 - Pf1N1B4_559 0.73 -0.6 656,784 - Pf1N1B4_559 0.73 -2.9 656,784 - Pf1N1B4_559 0.73 -1.6 656,784 - Pf1N1B4_559 0.73 -0.3 656,784 - Pf1N1B4_559 0.73 -0.1 656,784 - Pf1N1B4_559 0.73 -0.4 656,784 - Pf1N1B4_559 0.73 +1.9 656,923 + +0.5 657,123 + Pf1N1B4_560 0.11 +1.2 657,124 - Pf1N1B4_560 0.11 -0.4 657,124 - Pf1N1B4_560 0.11 +1.9 657,124 - Pf1N1B4_560 0.11 -0.4 657,124 - Pf1N1B4_560 0.11 +0.2 657,124 - Pf1N1B4_560 0.11 -0.1 657,124 - Pf1N1B4_560 0.11 +2.3 657,187 + Pf1N1B4_560 0.18 +0.1 657,187 + Pf1N1B4_560 0.18 +0.6 657,188 - Pf1N1B4_560 0.18 +1.5 657,957 + -0.1 657,958 - -1.2 658,013 + -2.1 658,013 + +1.1 658,013 + +0.9 658,014 - -3.1 658,060 + +0.5 658,060 + -0.1 658,060 + +2.3 658,060 + -0.1 658,060 + -1.1 658,060 + +0.9 658,060 + -0.6 658,061 - +0.6 658,061 - +0.9 658,061 - +1.5 658,061 - -0.4 658,061 - -0.8 658,264 + Pf1N1B4_561 0.35 +1.5 658,265 - Pf1N1B4_561 0.35 +0.8 658,483 + Pf1N1B4_561 0.72 +0.5 658,483 + +0.9 658,483 + -1.6 658,483 + Pf1N1B4_561 0.72 -1.1 658,483 + Pf1N1B4_561 0.72 -2.6 658,483 + Pf1N1B4_561 0.72 +1.9 658,519 + Pf1N1B4_561 0.78 -1.4 658,519 + Pf1N1B4_561 0.78 -1.1 658,520 - Pf1N1B4_561 0.78 +0.7 658,527 + Pf1N1B4_561 0.79 +1.9 658,711 + +0.9 658,711 + -1.1 658,711 + -0.1 658,711 + +2.8 658,711 + +1.3 658,711 + +1.8 658,711 + -1.3 658,711 + -2.4 658,711 + -0.5 658,711 + -0.3 658,711 + -0.8 658,712 - +0.9 658,712 - -0.1 658,713 + +0.3 658,713 + -2.4 658,713 + +0.8 658,713 + -0.4 658,713 + -1.1 658,714 - +0.4 658,714 - -1.1 658,714 - -1.1 658,776 + -0.1 658,777 - +0.5 658,777 - +1.3 658,786 + -2.4 658,786 + +0.9 658,786 + -0.1 658,787 - -0.1 658,787 - -0.4 658,787 - +0.2 658,787 - -0.4 658,787 - +0.9 658,799 - -0.9 658,799 - -0.6 658,799 - -0.6 658,799 - -0.6
Or see this region's nucleotide sequence