Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5509

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5508 and Pf1N1B4_5509 are separated by 56 nucleotidesPf1N1B4_5509 and Pf1N1B4_5510 are separated by 466 nucleotides Pf1N1B4_5508 - hypothetical protein, at 258,583 to 258,807 _5508 Pf1N1B4_5509 - hypothetical protein, at 258,864 to 258,983 _5509 Pf1N1B4_5510 - hypothetical protein, at 259,450 to 259,563 _5510 Position (kb) 258 259Strain fitness (log2 ratio) -2 -1 0 1 2 3at 257.900 kb on - strandat 257.965 kb on - strandat 257.972 kb on + strandat 257.972 kb on + strandat 257.972 kb on + strandat 257.972 kb on + strandat 257.972 kb on + strandat 257.973 kb on - strandat 257.973 kb on - strandat 258.081 kb on + strandat 258.082 kb on - strandat 258.131 kb on - strandat 258.197 kb on + strandat 258.197 kb on + strandat 258.197 kb on + strandat 258.197 kb on + strandat 258.198 kb on - strandat 258.209 kb on + strandat 258.209 kb on + strandat 258.210 kb on - strandat 258.210 kb on - strandat 258.220 kb on + strandat 258.221 kb on - strandat 258.361 kb on + strandat 258.361 kb on + strandat 258.362 kb on - strandat 258.362 kb on - strandat 258.362 kb on - strandat 258.364 kb on + strandat 258.364 kb on + strandat 258.364 kb on + strandat 258.364 kb on + strandat 258.501 kb on + strandat 258.501 kb on + strandat 258.501 kb on + strandat 258.501 kb on + strandat 258.501 kb on + strandat 258.501 kb on + strandat 258.502 kb on - strandat 258.502 kb on - strandat 258.502 kb on - strandat 258.565 kb on + strandat 258.565 kb on + strandat 258.565 kb on + strandat 258.566 kb on - strandat 258.566 kb on - strandat 258.588 kb on + strandat 258.588 kb on + strandat 258.588 kb on + strandat 258.589 kb on - strandat 258.589 kb on - strandat 258.589 kb on - strandat 258.589 kb on - strandat 258.589 kb on - strandat 258.592 kb on + strandat 258.593 kb on - strandat 258.593 kb on - strandat 258.722 kb on + strand, within Pf1N1B4_5508at 258.722 kb on + strand, within Pf1N1B4_5508at 258.832 kb on + strandat 258.832 kb on + strandat 258.833 kb on - strandat 258.833 kb on - strandat 258.886 kb on + strand, within Pf1N1B4_5509at 258.887 kb on - strand, within Pf1N1B4_5509at 258.922 kb on + strand, within Pf1N1B4_5509at 259.010 kb on + strandat 259.011 kb on - strandat 259.024 kb on + strandat 259.061 kb on + strandat 259.061 kb on + strandat 259.062 kb on - strandat 259.062 kb on - strandat 259.062 kb on - strandat 259.062 kb on - strandat 259.103 kb on - strandat 259.112 kb on + strandat 259.157 kb on + strandat 259.158 kb on - strandat 259.158 kb on - strandat 259.158 kb on - strandat 259.158 kb on - strandat 259.196 kb on + strandat 259.196 kb on + strandat 259.196 kb on + strandat 259.197 kb on - strandat 259.197 kb on - strandat 259.197 kb on - strandat 259.197 kb on - strandat 259.200 kb on + strandat 259.200 kb on + strandat 259.210 kb on - strandat 259.272 kb on + strandat 259.273 kb on - strandat 259.284 kb on - strandat 259.334 kb on + strandat 259.335 kb on - strandat 259.335 kb on - strandat 259.360 kb on + strandat 259.360 kb on + strandat 259.360 kb on + strandat 259.361 kb on - strandat 259.361 kb on - strandat 259.442 kb on + strandat 259.443 kb on - strandat 259.451 kb on + strandat 259.452 kb on - strandat 259.452 kb on - strandat 259.514 kb on + strand, within Pf1N1B4_5510at 259.571 kb on + strandat 259.571 kb on + strandat 259.575 kb on + strandat 259.575 kb on + strandat 259.575 kb on + strandat 259.575 kb on + strandat 259.575 kb on + strandat 259.575 kb on + strandat 259.576 kb on - strandat 259.576 kb on - strandat 259.617 kb on + strandat 259.707 kb on - strandat 259.729 kb on + strandat 259.730 kb on - strandat 259.730 kb on - strandat 259.730 kb on - strandat 259.730 kb on - strandat 259.733 kb on + strandat 259.733 kb on + strandat 259.733 kb on + strandat 259.734 kb on - strandat 259.734 kb on - strandat 259.734 kb on - strandat 259.734 kb on - strandat 259.758 kb on + strandat 259.758 kb on + strandat 259.758 kb on + strandat 259.797 kb on + strandat 259.855 kb on - strandat 259.919 kb on - strandat 259.960 kb on + strandat 259.960 kb on + strandat 259.961 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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257,900 - +0.8
257,965 - +1.7
257,972 + +1.1
257,972 + -2.1
257,972 + +1.3
257,972 + -0.6
257,972 + +2.4
257,973 - -0.9
257,973 - +0.1
258,081 + +3.0
258,082 - +2.3
258,131 - +0.7
258,197 + -0.0
258,197 + +0.5
258,197 + +0.1
258,197 + -0.5
258,198 - +0.5
258,209 + +0.1
258,209 + +1.7
258,210 - +1.4
258,210 - +1.1
258,220 + -1.2
258,221 - +0.3
258,361 + -0.9
258,361 + -1.5
258,362 - -0.3
258,362 - +1.1
258,362 - -0.3
258,364 + -0.2
258,364 + +0.4
258,364 + -0.9
258,364 + +0.5
258,501 + +0.7
258,501 + -0.5
258,501 + +0.7
258,501 + -0.1
258,501 + +1.4
258,501 + +1.3
258,502 - +1.4
258,502 - -0.6
258,502 - -0.9
258,565 + +0.7
258,565 + +0.4
258,565 + +0.2
258,566 - -1.4
258,566 - -0.9
258,588 + -2.5
258,588 + +2.1
258,588 + -0.2
258,589 - -0.7
258,589 - -0.9
258,589 - +1.1
258,589 - +0.6
258,589 - -1.2
258,592 + +2.4
258,593 - -1.9
258,593 - +2.4
258,722 + Pf1N1B4_5508 0.62 -1.0
258,722 + Pf1N1B4_5508 0.62 +0.3
258,832 + -1.1
258,832 + -0.1
258,833 - -0.7
258,833 - -0.9
258,886 + Pf1N1B4_5509 0.18 +0.6
258,887 - Pf1N1B4_5509 0.19 -2.2
258,922 + Pf1N1B4_5509 0.48 -1.7
259,010 + +0.4
259,011 - +0.4
259,024 + +1.7
259,061 + +0.5
259,061 + +0.1
259,062 - -0.2
259,062 - +2.1
259,062 - +1.4
259,062 - +0.1
259,103 - -1.5
259,112 + +0.1
259,157 + +1.1
259,158 - +1.1
259,158 - -0.6
259,158 - +0.9
259,158 - -1.3
259,196 + +0.3
259,196 + +1.4
259,196 + +0.1
259,197 - -0.2
259,197 - +1.1
259,197 - -0.2
259,197 - +0.4
259,200 + -0.9
259,200 + -2.5
259,210 - +0.1
259,272 + +2.1
259,273 - +0.1
259,284 - +0.3
259,334 + -0.1
259,335 - +1.1
259,335 - -0.5
259,360 + +0.5
259,360 + -1.9
259,360 + +0.3
259,361 - +0.5
259,361 - +1.1
259,442 + -0.9
259,443 - -0.0
259,451 + -0.2
259,452 - +0.7
259,452 - +1.1
259,514 + Pf1N1B4_5510 0.56 +0.5
259,571 + +1.7
259,571 + +0.1
259,575 + +0.1
259,575 + +0.1
259,575 + +1.3
259,575 + +0.1
259,575 + +0.1
259,575 + +0.4
259,576 - +0.1
259,576 - +0.6
259,617 + -0.3
259,707 - -0.5
259,729 + +1.7
259,730 - +0.9
259,730 - -0.9
259,730 - -0.3
259,730 - -2.2
259,733 + +1.1
259,733 + -0.1
259,733 + +1.1
259,734 - -0.1
259,734 - -0.1
259,734 - -1.5
259,734 - -0.2
259,758 + +2.1
259,758 + +0.8
259,758 + +0.1
259,797 + +1.1
259,855 - +0.7
259,919 - -0.3
259,960 + -0.4
259,960 + +1.1
259,961 - +0.8

Or see this region's nucleotide sequence