Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5327 and Pf1N1B4_5328 are separated by 39 nucleotides Pf1N1B4_5328 and Pf1N1B4_5329 are separated by 219 nucleotides Pf1N1B4_5329 and Pf1N1B4_5330 are separated by 25 nucleotides Pf1N1B4_5330 and Pf1N1B4_5331 are separated by 356 nucleotides Pf1N1B4_5331 and Pf1N1B4_5332 are separated by 2 nucleotides
Pf1N1B4_5327 - hypothetical protein, at 76,415 to 76,909
_5327
Pf1N1B4_5328 - hypothetical protein, at 76,949 to 77,134
_5328
Pf1N1B4_5329 - hypothetical protein, at 77,354 to 77,896
_5329
Pf1N1B4_5330 - hypothetical protein, at 77,922 to 78,233
_5330
Pf1N1B4_5331 - hypothetical protein, at 78,590 to 78,760
_5331
Pf1N1B4_5332 - hypothetical protein, at 78,763 to 78,957
_5332
Position (kb) 77
78 Strain fitness (log2 ratio) -2
-1
0
1
2 at 76.427 kb on - strand at 76.427 kb on - strand at 76.427 kb on - strand at 76.560 kb on + strand, within Pf1N1B4_5327 at 76.561 kb on - strand, within Pf1N1B4_5327 at 76.561 kb on - strand, within Pf1N1B4_5327 at 76.561 kb on - strand, within Pf1N1B4_5327 at 76.648 kb on - strand, within Pf1N1B4_5327 at 76.732 kb on - strand, within Pf1N1B4_5327 at 76.732 kb on - strand, within Pf1N1B4_5327 at 76.782 kb on + strand, within Pf1N1B4_5327 at 76.782 kb on + strand, within Pf1N1B4_5327 at 76.782 kb on + strand, within Pf1N1B4_5327 at 76.782 kb on + strand, within Pf1N1B4_5327 at 76.782 kb on + strand, within Pf1N1B4_5327 at 76.782 kb on + strand, within Pf1N1B4_5327 at 76.782 kb on + strand, within Pf1N1B4_5327 at 76.782 kb on + strand, within Pf1N1B4_5327 at 76.782 kb on + strand, within Pf1N1B4_5327 at 76.782 kb on + strand, within Pf1N1B4_5327 at 76.782 kb on + strand, within Pf1N1B4_5327 at 76.782 kb on + strand, within Pf1N1B4_5327 at 76.783 kb on - strand, within Pf1N1B4_5327 at 76.783 kb on - strand, within Pf1N1B4_5327 at 76.783 kb on - strand, within Pf1N1B4_5327 at 76.783 kb on - strand, within Pf1N1B4_5327 at 76.783 kb on - strand, within Pf1N1B4_5327 at 76.783 kb on - strand, within Pf1N1B4_5327 at 76.783 kb on - strand, within Pf1N1B4_5327 at 76.783 kb on - strand, within Pf1N1B4_5327 at 76.783 kb on - strand, within Pf1N1B4_5327 at 76.830 kb on + strand, within Pf1N1B4_5327 at 76.830 kb on + strand, within Pf1N1B4_5327 at 76.830 kb on + strand, within Pf1N1B4_5327 at 76.830 kb on + strand, within Pf1N1B4_5327 at 76.831 kb on - strand, within Pf1N1B4_5327 at 76.876 kb on + strand at 76.877 kb on - strand at 76.946 kb on - strand at 76.950 kb on + strand at 76.950 kb on + strand at 76.950 kb on + strand at 76.951 kb on - strand at 76.951 kb on - strand at 76.954 kb on + strand at 76.954 kb on + strand at 76.955 kb on - strand at 76.955 kb on - strand at 77.161 kb on - strand at 77.161 kb on - strand at 77.161 kb on - strand at 77.161 kb on - strand at 77.204 kb on - strand at 77.249 kb on + strand at 77.249 kb on + strand at 77.254 kb on + strand at 77.255 kb on - strand at 77.255 kb on - strand at 77.336 kb on + strand at 77.336 kb on + strand at 77.337 kb on - strand at 77.362 kb on + strand at 77.371 kb on + strand at 77.410 kb on + strand, within Pf1N1B4_5329 at 77.410 kb on + strand, within Pf1N1B4_5329 at 77.410 kb on + strand, within Pf1N1B4_5329 at 77.410 kb on + strand, within Pf1N1B4_5329 at 77.411 kb on - strand, within Pf1N1B4_5329 at 77.686 kb on + strand, within Pf1N1B4_5329 at 77.752 kb on - strand, within Pf1N1B4_5329 at 77.781 kb on + strand, within Pf1N1B4_5329 at 77.781 kb on + strand at 77.782 kb on - strand, within Pf1N1B4_5329 at 77.847 kb on + strand at 77.923 kb on + strand at 77.923 kb on + strand at 77.980 kb on + strand, within Pf1N1B4_5330 at 78.022 kb on - strand, within Pf1N1B4_5330 at 78.152 kb on + strand at 78.152 kb on + strand, within Pf1N1B4_5330 at 78.153 kb on - strand at 78.313 kb on + strand at 78.313 kb on + strand at 78.313 kb on + strand at 78.313 kb on + strand at 78.314 kb on - strand at 78.336 kb on + strand at 78.336 kb on + strand at 78.336 kb on + strand at 78.336 kb on + strand at 78.351 kb on + strand at 78.351 kb on + strand at 78.351 kb on + strand at 78.352 kb on - strand at 78.352 kb on - strand at 78.392 kb on + strand at 78.392 kb on + strand at 78.425 kb on + strand at 78.425 kb on + strand at 78.426 kb on - strand at 78.426 kb on - strand at 78.474 kb on + strand at 78.474 kb on + strand at 78.475 kb on - strand at 78.475 kb on - strand at 78.475 kb on - strand at 78.475 kb on - strand at 78.475 kb on - strand at 78.597 kb on - strand at 78.597 kb on - strand at 78.597 kb on - strand at 78.729 kb on + strand, within Pf1N1B4_5331 at 78.730 kb on - strand, within Pf1N1B4_5331 at 78.730 kb on - strand, within Pf1N1B4_5331 at 78.730 kb on - strand, within Pf1N1B4_5331 at 78.739 kb on - strand, within Pf1N1B4_5331
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 76,427 - -0.4 76,427 - +0.7 76,427 - +1.4 76,560 + Pf1N1B4_5327 0.29 -0.3 76,561 - Pf1N1B4_5327 0.29 -0.1 76,561 - Pf1N1B4_5327 0.29 -0.3 76,561 - Pf1N1B4_5327 0.29 -0.5 76,648 - Pf1N1B4_5327 0.47 -0.9 76,732 - Pf1N1B4_5327 0.64 +1.4 76,732 - Pf1N1B4_5327 0.64 -0.3 76,782 + Pf1N1B4_5327 0.74 +0.4 76,782 + Pf1N1B4_5327 0.74 +1.1 76,782 + Pf1N1B4_5327 0.74 +1.3 76,782 + Pf1N1B4_5327 0.74 -1.5 76,782 + Pf1N1B4_5327 0.74 +0.4 76,782 + Pf1N1B4_5327 0.74 -0.7 76,782 + Pf1N1B4_5327 0.74 +0.4 76,782 + Pf1N1B4_5327 0.74 -0.6 76,782 + Pf1N1B4_5327 0.74 -0.9 76,782 + Pf1N1B4_5327 0.74 +0.7 76,782 + Pf1N1B4_5327 0.74 +2.1 76,782 + Pf1N1B4_5327 0.74 +0.6 76,783 - Pf1N1B4_5327 0.74 -0.9 76,783 - Pf1N1B4_5327 0.74 +1.1 76,783 - Pf1N1B4_5327 0.74 +0.8 76,783 - Pf1N1B4_5327 0.74 +1.1 76,783 - Pf1N1B4_5327 0.74 +0.7 76,783 - Pf1N1B4_5327 0.74 -1.9 76,783 - Pf1N1B4_5327 0.74 +0.3 76,783 - Pf1N1B4_5327 0.74 -0.9 76,783 - Pf1N1B4_5327 0.74 +2.6 76,830 + Pf1N1B4_5327 0.84 -1.1 76,830 + Pf1N1B4_5327 0.84 -1.1 76,830 + Pf1N1B4_5327 0.84 +0.1 76,830 + Pf1N1B4_5327 0.84 -1.9 76,831 - Pf1N1B4_5327 0.84 -2.5 76,876 + -0.1 76,877 - -0.9 76,946 - +0.9 76,950 + -0.9 76,950 + +1.8 76,950 + -0.6 76,951 - +1.3 76,951 - +0.1 76,954 + -0.8 76,954 + -0.9 76,955 - -0.9 76,955 - +1.4 77,161 - -0.6 77,161 - -0.3 77,161 - -0.2 77,161 - +0.5 77,204 - +0.2 77,249 + -1.5 77,249 + +1.4 77,254 + +0.1 77,255 - +0.7 77,255 - -0.9 77,336 + -0.3 77,336 + +0.1 77,337 - +0.2 77,362 + -0.2 77,371 + +0.2 77,410 + Pf1N1B4_5329 0.10 -0.5 77,410 + Pf1N1B4_5329 0.10 -1.7 77,410 + Pf1N1B4_5329 0.10 -1.0 77,410 + Pf1N1B4_5329 0.10 +0.1 77,411 - Pf1N1B4_5329 0.10 +1.7 77,686 + Pf1N1B4_5329 0.61 +0.1 77,752 - Pf1N1B4_5329 0.73 +0.8 77,781 + Pf1N1B4_5329 0.79 -2.0 77,781 + +1.1 77,782 - Pf1N1B4_5329 0.79 -0.6 77,847 + -0.2 77,923 + -0.3 77,923 + -0.7 77,980 + Pf1N1B4_5330 0.19 +0.2 78,022 - Pf1N1B4_5330 0.32 -1.5 78,152 + -0.9 78,152 + Pf1N1B4_5330 0.74 -0.9 78,153 - -0.3 78,313 + +0.4 78,313 + -0.3 78,313 + -0.6 78,313 + +1.9 78,314 - -1.2 78,336 + +1.0 78,336 + -0.2 78,336 + +0.3 78,336 + +0.1 78,351 + -0.9 78,351 + +0.1 78,351 + +0.3 78,352 - +0.6 78,352 - -1.9 78,392 + +0.1 78,392 + +0.3 78,425 + +0.1 78,425 + +2.4 78,426 - -0.5 78,426 - -1.3 78,474 + -1.5 78,474 + +0.9 78,475 - +0.1 78,475 - -0.6 78,475 - -2.2 78,475 - +1.3 78,475 - -0.9 78,597 - +0.1 78,597 - +1.4 78,597 - +0.8 78,729 + Pf1N1B4_5331 0.81 +1.1 78,730 - Pf1N1B4_5331 0.82 -0.3 78,730 - Pf1N1B4_5331 0.82 +1.6 78,730 - Pf1N1B4_5331 0.82 -2.2 78,739 - Pf1N1B4_5331 0.87 +1.3
Or see this region's nucleotide sequence