Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_529 and Pf1N1B4_530 are separated by 78 nucleotides Pf1N1B4_530 and Pf1N1B4_531 are separated by 186 nucleotides Pf1N1B4_531 and Pf1N1B4_532 are separated by 140 nucleotides Pf1N1B4_532 and Pf1N1B4_533 are separated by 104 nucleotides
Pf1N1B4_529 - SoxH protein, homolog, at 629,152 to 629,877
_529
Pf1N1B4_530 - hypothetical protein, at 629,956 to 630,180
_530
Pf1N1B4_531 - hypothetical protein, at 630,367 to 630,495
_531
Pf1N1B4_532 - Transcriptional regulators, LysR family, at 630,636 to 631,529
_532
Pf1N1B4_533 - Possible MFS Superfamily transporter precursor, at 631,634 to 632,824
_533
Position (kb) 630
631
632 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 629.704 kb on + strand at 629.705 kb on - strand, within Pf1N1B4_529 at 629.705 kb on - strand, within Pf1N1B4_529 at 629.732 kb on - strand, within Pf1N1B4_529 at 629.732 kb on - strand, within Pf1N1B4_529 at 629.753 kb on - strand, within Pf1N1B4_529 at 629.887 kb on + strand at 629.887 kb on + strand at 629.888 kb on - strand at 629.917 kb on - strand at 629.917 kb on - strand at 629.924 kb on + strand at 629.974 kb on + strand at 629.974 kb on + strand at 629.974 kb on + strand at 629.974 kb on + strand at 629.974 kb on + strand at 629.975 kb on - strand at 629.975 kb on - strand at 629.975 kb on - strand at 629.975 kb on - strand at 629.975 kb on - strand at 630.046 kb on - strand, within Pf1N1B4_530 at 630.195 kb on + strand at 630.557 kb on + strand at 630.558 kb on - strand at 630.558 kb on - strand at 630.570 kb on + strand at 630.607 kb on + strand at 630.607 kb on + strand at 630.674 kb on - strand at 631.186 kb on + strand, within Pf1N1B4_532 at 631.240 kb on + strand at 631.240 kb on + strand at 631.240 kb on + strand, within Pf1N1B4_532 at 631.240 kb on + strand, within Pf1N1B4_532 at 631.240 kb on + strand, within Pf1N1B4_532 at 631.241 kb on - strand, within Pf1N1B4_532 at 631.241 kb on - strand, within Pf1N1B4_532 at 631.241 kb on - strand, within Pf1N1B4_532 at 631.241 kb on - strand, within Pf1N1B4_532 at 631.241 kb on - strand, within Pf1N1B4_532 at 631.241 kb on - strand at 631.241 kb on - strand, within Pf1N1B4_532 at 631.331 kb on - strand, within Pf1N1B4_532 at 631.793 kb on + strand at 631.793 kb on + strand, within Pf1N1B4_533 at 632.132 kb on + strand, within Pf1N1B4_533 at 632.132 kb on + strand at 632.132 kb on + strand, within Pf1N1B4_533 at 632.132 kb on + strand, within Pf1N1B4_533 at 632.132 kb on + strand, within Pf1N1B4_533 at 632.132 kb on + strand at 632.132 kb on + strand, within Pf1N1B4_533 at 632.133 kb on - strand, within Pf1N1B4_533 at 632.133 kb on - strand, within Pf1N1B4_533 at 632.133 kb on - strand, within Pf1N1B4_533 at 632.256 kb on + strand, within Pf1N1B4_533 at 632.261 kb on + strand, within Pf1N1B4_533 at 632.261 kb on + strand, within Pf1N1B4_533 at 632.261 kb on + strand, within Pf1N1B4_533 at 632.261 kb on + strand, within Pf1N1B4_533 at 632.261 kb on + strand, within Pf1N1B4_533 at 632.261 kb on + strand, within Pf1N1B4_533 at 632.262 kb on - strand, within Pf1N1B4_533 at 632.262 kb on - strand, within Pf1N1B4_533 at 632.262 kb on - strand, within Pf1N1B4_533 at 632.270 kb on + strand, within Pf1N1B4_533 at 632.271 kb on - strand, within Pf1N1B4_533 at 632.282 kb on + strand, within Pf1N1B4_533 at 632.450 kb on - strand, within Pf1N1B4_533
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 629,704 + +0.7 629,705 - Pf1N1B4_529 0.76 +0.5 629,705 - Pf1N1B4_529 0.76 +0.9 629,732 - Pf1N1B4_529 0.80 -0.9 629,732 - Pf1N1B4_529 0.80 -0.6 629,753 - Pf1N1B4_529 0.83 -0.2 629,887 + +2.8 629,887 + -1.6 629,888 - -1.1 629,917 - +1.3 629,917 - -1.6 629,924 + +0.9 629,974 + -0.5 629,974 + +0.2 629,974 + -0.1 629,974 + +0.5 629,974 + +1.6 629,975 - +1.1 629,975 - +0.4 629,975 - -0.1 629,975 - +0.7 629,975 - -1.1 630,046 - Pf1N1B4_530 0.40 -0.1 630,195 + -0.9 630,557 + +0.9 630,558 - -2.6 630,558 - +1.7 630,570 + +1.5 630,607 + -0.1 630,607 + +0.5 630,674 - -0.3 631,186 + Pf1N1B4_532 0.62 -2.1 631,240 + -0.1 631,240 + -1.4 631,240 + Pf1N1B4_532 0.68 -1.5 631,240 + Pf1N1B4_532 0.68 +0.7 631,240 + Pf1N1B4_532 0.68 -0.1 631,241 - Pf1N1B4_532 0.68 +0.5 631,241 - Pf1N1B4_532 0.68 +0.9 631,241 - Pf1N1B4_532 0.68 -1.1 631,241 - Pf1N1B4_532 0.68 -1.1 631,241 - Pf1N1B4_532 0.68 -0.6 631,241 - -2.1 631,241 - Pf1N1B4_532 0.68 +0.2 631,331 - Pf1N1B4_532 0.78 -1.6 631,793 + -1.1 631,793 + Pf1N1B4_533 0.13 -1.1 632,132 + Pf1N1B4_533 0.42 -0.6 632,132 + -0.1 632,132 + Pf1N1B4_533 0.42 +0.2 632,132 + Pf1N1B4_533 0.42 +0.8 632,132 + Pf1N1B4_533 0.42 -1.3 632,132 + -0.1 632,132 + Pf1N1B4_533 0.42 +0.8 632,133 - Pf1N1B4_533 0.42 -1.9 632,133 - Pf1N1B4_533 0.42 -0.2 632,133 - Pf1N1B4_533 0.42 -1.1 632,256 + Pf1N1B4_533 0.52 -0.3 632,261 + Pf1N1B4_533 0.53 -1.1 632,261 + Pf1N1B4_533 0.53 +0.4 632,261 + Pf1N1B4_533 0.53 +0.5 632,261 + Pf1N1B4_533 0.53 +0.5 632,261 + Pf1N1B4_533 0.53 +0.7 632,261 + Pf1N1B4_533 0.53 -0.4 632,262 - Pf1N1B4_533 0.53 +1.7 632,262 - Pf1N1B4_533 0.53 -2.1 632,262 - Pf1N1B4_533 0.53 +0.9 632,270 + Pf1N1B4_533 0.53 -0.3 632,271 - Pf1N1B4_533 0.53 +0.9 632,282 + Pf1N1B4_533 0.54 +0.2 632,450 - Pf1N1B4_533 0.69 -1.1
Or see this region's nucleotide sequence