Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5124

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5123 and Pf1N1B4_5124 are separated by 249 nucleotidesPf1N1B4_5124 and Pf1N1B4_5125 are separated by 639 nucleotides Pf1N1B4_5123 - T1SS secreted agglutinin RTX, at 5,692,228 to 5,700,051 _5123 Pf1N1B4_5124 - two component transcriptional regulator, LuxR family, at 5,700,301 to 5,700,918 _5124 Pf1N1B4_5125 - Type I secretion outer membrane protein, TolC precursor, at 5,701,558 to 5,702,937 _5125 Position (kb) 5700 5701Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5699.362 kb on + strandat 5699.386 kb on + strandat 5699.386 kb on + strandat 5699.935 kb on + strandat 5699.935 kb on + strandat 5700.368 kb on + strand, within Pf1N1B4_5124at 5700.410 kb on + strandat 5700.476 kb on + strand, within Pf1N1B4_5124at 5700.476 kb on + strand, within Pf1N1B4_5124at 5700.477 kb on - strand, within Pf1N1B4_5124at 5700.477 kb on - strand, within Pf1N1B4_5124at 5700.526 kb on + strand, within Pf1N1B4_5124at 5700.574 kb on + strand, within Pf1N1B4_5124at 5700.575 kb on - strandat 5700.576 kb on + strand, within Pf1N1B4_5124at 5700.577 kb on - strandat 5700.890 kb on + strandat 5700.891 kb on - strandat 5700.994 kb on + strandat 5700.995 kb on - strandat 5701.045 kb on + strandat 5701.046 kb on - strandat 5701.048 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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5,699,362 + +1.1
5,699,386 + +0.1
5,699,386 + +0.5
5,699,935 + +1.1
5,699,935 + -1.5
5,700,368 + Pf1N1B4_5124 0.11 +0.9
5,700,410 + -0.5
5,700,476 + Pf1N1B4_5124 0.28 +1.1
5,700,476 + Pf1N1B4_5124 0.28 +1.1
5,700,477 - Pf1N1B4_5124 0.28 +0.4
5,700,477 - Pf1N1B4_5124 0.28 -0.1
5,700,526 + Pf1N1B4_5124 0.36 -0.2
5,700,574 + Pf1N1B4_5124 0.44 +0.2
5,700,575 - +2.1
5,700,576 + Pf1N1B4_5124 0.44 +0.6
5,700,577 - -1.1
5,700,890 + -0.1
5,700,891 - +2.1
5,700,994 + -0.2
5,700,995 - +0.9
5,701,045 + -2.2
5,701,046 - -1.5
5,701,048 - -3.7

Or see this region's nucleotide sequence