Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5103 and Pf1N1B4_5104 are separated by 8 nucleotides Pf1N1B4_5104 and Pf1N1B4_5105 overlap by 4 nucleotides Pf1N1B4_5105 and Pf1N1B4_5106 are separated by 33 nucleotides
Pf1N1B4_5103 - Dipeptide transport system permease protein DppC (TC 3.A.1.5.2), at 5,656,705 to 5,657,559
_5103
Pf1N1B4_5104 - Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1), at 5,657,568 to 5,658,542
_5104
Pf1N1B4_5105 - Peptide ABC transporter, ATP-binding protein, at 5,658,539 to 5,659,510
_5105
Pf1N1B4_5106 - Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2); Putative hemin-binding lipoprotein, at 5,659,544 to 5,661,058
_5106
Position (kb) 5658
5659
5660 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5657.719 kb on + strand, within Pf1N1B4_5104 at 5657.720 kb on - strand, within Pf1N1B4_5104 at 5658.309 kb on + strand, within Pf1N1B4_5104 at 5658.597 kb on + strand at 5659.223 kb on + strand at 5659.224 kb on - strand, within Pf1N1B4_5105 at 5659.224 kb on - strand, within Pf1N1B4_5105 at 5659.224 kb on - strand, within Pf1N1B4_5105 at 5659.224 kb on - strand, within Pf1N1B4_5105 at 5659.509 kb on - strand at 5659.520 kb on + strand at 5659.809 kb on - strand, within Pf1N1B4_5106 at 5660.075 kb on + strand, within Pf1N1B4_5106 at 5660.075 kb on + strand at 5660.397 kb on + strand, within Pf1N1B4_5106 at 5660.474 kb on + strand, within Pf1N1B4_5106 at 5660.480 kb on + strand at 5660.481 kb on - strand, within Pf1N1B4_5106 at 5660.481 kb on - strand, within Pf1N1B4_5106
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,657,719 + Pf1N1B4_5104 0.15 +0.5 5,657,720 - Pf1N1B4_5104 0.16 -0.2 5,658,309 + Pf1N1B4_5104 0.76 +1.1 5,658,597 + -0.5 5,659,223 + -0.1 5,659,224 - Pf1N1B4_5105 0.70 -1.1 5,659,224 - Pf1N1B4_5105 0.70 -0.2 5,659,224 - Pf1N1B4_5105 0.70 +0.2 5,659,224 - Pf1N1B4_5105 0.70 -2.0 5,659,509 - +2.3 5,659,520 + -0.5 5,659,809 - Pf1N1B4_5106 0.17 -1.0 5,660,075 + Pf1N1B4_5106 0.35 -1.5 5,660,075 + -2.5 5,660,397 + Pf1N1B4_5106 0.56 +0.4 5,660,474 + Pf1N1B4_5106 0.61 +1.3 5,660,480 + -1.5 5,660,481 - Pf1N1B4_5106 0.62 -0.2 5,660,481 - Pf1N1B4_5106 0.62 -2.5
Or see this region's nucleotide sequence